Job Description P0AAZ4 Confidence 99.86% Date Thu Jan 5 11:14:11 GMT 2012 Rank 45 Aligned Residues 227 % Identity 19% Template c2zamA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form Resolution 3.50 Å

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		21	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.													.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure					.																									.	.	.	.	.	.	.	.	.	.	.	.																																							.	.
Query SS confidence					.																									.	.	.	.	.	.	.	.	.	.	.	.																																							.	.
Query Sequence		R	P	E	.	N	L	A	Q	Y	I	G	Q	Q	H	L	L	A	A	G	K	P	L	P	R	A	I	E	A	.	.	.	.	.	.	.	.	.	.	.	.	G	H	L	H	S	M	I	L	W	G	P	P	G	T	G	K	T	T	L	A	E	V	I	A	R	Y	A	N	A	D	V	E	R	I	S	A	V	T	.	.
Query Conservation					.																									.	.	.	.	.	.	.	.	.	.	.	.																																							.	.
Alig confidence					.															.	.	.								.	.	.	.	.	.	.	.	.	.	.	.																																							.	.
Template Conservation																				.	.	.
Template Sequence		R	P	N	V	K	W	S	D	V	A	G	L	E	G	A	K	E	A	.	.	.	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	N	N	S	T	F	F	S	I	S	S	S	D	L
Template Known Secondary structure							G	G	G	S		S								.	.	.					T							G	G	G	S		S	S					S							S	T	T	S													T	T	T									S	T	T
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.				.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
			86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.						.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.		.
Predicted Secondary structure		.																																		.	.	.	.	.																																								.
Query SS confidence		.																																		.	.	.	.	.																																								.
Query Sequence		.	S	G	V	K	E	I	R	E	A	I	E	R	A	R	Q	N	R	N	A	G	R	R	T	I	L	F	V	D	E	V	H	R	F	.	.	.	.	.	N	K	S	Q	Q	D	A	F	L	P	H	I	E	D	G	T	I	T	F	I	G	A	T	T	E	N	P	S	F	E	L	N	S	A	L	L	S	R	A	.	R
Query Conservation		.																																		.	.	.	.	.																																								.
Alig confidence		.																	.	.	.	.														.	.	.	.	.																																								.
Template Conservation																			.	.	.	.
Template Sequence		V	S	S	E	K	L	V	K	N	L	F	Q	L	A	R	E	N	.	.	.	.	K	P	S	I	I	F	I	D	E	I	D	S	S	E	A	A	R	R	I	K	T	E	F	L	V	Q	M	Q	G	V	G	V	D	N	D	G	I	L	V	L	G	A	T	N	I	P	W	V	L	D	S	A	I	R	R	R	F	E	K
Template Known Secondary structure		T				T												T	.	.	.	.		S							S																				T	S	S	S			T	T								S			T	T	S									S
Template Predicted Secondary structure																			.	.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.					.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																																																		.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Y	L	L	K	S	L	S	T	E	D	I	E	Q	V	L	T	Q	A	M	E	D	K	T	R	G	Y	G	G	Q	D	I	V	L	P	D	E	T	R	R	A	I	A	E	L	V	N	G	.	D	A	R	R	A	L	N	T	L	E	M	M	A	D	M	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																		.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.																			.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.
Template Sequence		R	I	Y	I	P	L	P	E	A	H	A	R	A	A	M	F	R	L	H	L	G	S	T	.	.	.	.	.	.	.	Q	N	S	L	T	E	A	D	F	Q	E	L	G	R	K	T	D	G	Y	S	G	A	D	I	S	I	I	V	R	D	A	L	M	Q	P	V	R	K	V	Q	S	A	T	H	F	K	K	V	R	G
Template Known Secondary structure										S												T	T		.	.	.	.	.	.	.		B													S			S																							S		S
Template Predicted Secondary structure																									.	.	.	.	.	.	.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.								.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
																																		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	D	D	S	G	K	R	V	L	K	P	E	L	L	T	E	I	A	G	E	R	S	A	R	F	D	N	K	G	D	R	F	Y	D	L	I	S	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	S	R	A	D	P	N	C	I	V	N	D	L	L	T	P	C	S	P	G	D	P	G	A	I	E	M	T	W	M	D	V	P	G	D	K	L	L	E	P	V	V	S	M	W	D	M	L	R	S	L	S	S	T	K	P	T	V	N	E	Q	D	L	L	K	L	K	K	F	T	E
Template Known Secondary structure				T	T															S	S	S	T	T						T	T	T	S		T	T	T	B					B										T	T				S
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions