Job Description P0AAZ4 Confidence 99.86% Date Thu Jan 5 11:14:11 GMT 2012 Rank 44 Aligned Residues 217 % Identity 19% Template c2z4rB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: crystal structure of domain iii from the thermotoga2 maritima replication initiation protein dnaa Resolution 3.05 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.						.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.														.	.
Query SS confidence																																																														.	.	.	.	.														.	.
Query Sequence		P	L	A	A	R	M	R	P	E	N	L	A	Q	Y	I	G	Q	Q	H	L	L	A	A	G	K	P	L	P	R	A	I	E	A	G	H	L	H	S	M	I	L	W	G	P	P	G	T	G	K	T	T	L	A	E	V	I	A	R	Y	A	.	.	.	.	.	N	A	D	V	E	R	I	S	A	V	T	S	G	.	.
Query Conservation																																																														.	.	.	.	.														.	.
Alig confidence													.	.																																																.	.	.	.	.														.	.
Template Conservation													.	.
Template Sequence		P	L	N	P	D	Y	T	F	E	N	F	.	.	V	V	G	P	G	N	S	F	A	Y	H	A	A	L	E	V	A	K	H	P	G	R	Y	N	P	L	F	I	Y	G	G	V	G	L	G	K	T	H	L	L	Q	S	I	G	N	Y	V	V	Q	N	E	P	D	L	R	V	M	Y	I	T	S	E	K	F	L	N	D
Template Known Secondary structure					S	S		S	G	G	G		.	.				T	T	T													S	T	T	T	S								S	S	S	S	S																S	S	S	S
Template Predicted Secondary structure													.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
			88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.						.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.						.	.	.	.	.
Predicted Secondary structure		.																																					.	.	.	.	.																													.	.	.	.	.
Query SS confidence		.																																					.	.	.	.	.																													.	.	.	.	.
Query Sequence		.	V	K	E	I	R	E	A	I	E	R	A	R	Q	N	R	N	A	G	R	R	T	I	L	F	V	D	E	V	H	R	F	N	K	S	Q	Q	.	.	.	.	.	D	A	F	L	P	H	I	E	D	G	T	I	T	F	I	G	A	T	T	E	N	P	S	F	E	L	N	S	.	.	.	.	.	A	L	L	S	R
Query Conservation		.																																					.	.	.	.	.																													.	.	.	.	.
Alig confidence		.																																					.	.	.	.	.																													.	.	.	.	.
Template Conservation
Template Sequence		L	V	D	S	M	K	E	G	K	L	N	E	F	R	E	K	Y	R	K	K	V	D	I	L	L	I	D	D	V	Q	F	L	I	G	K	T	G	V	Q	T	E	L	F	H	T	F	N	E	L	H	D	S	G	K	Q	I	V	I	C	S	D	R	E	P	Q	K	L	S	E	F	Q	D	R	L	V	S	R	F	Q	M
Template Known Secondary structure								T	S										T	T	T		S							G	G	G	G	T	T																	T	T	T								S	S		T	T	T		S	S											S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	V	Y	L	L	K	S	L	S	T	E	D	I	E	Q	V	L	T	Q	A	M	E	D	K	T	R	G	Y	G	G	Q	D	I	V	L	P	D	E	T	R	R	A	I	A	E	L	V	N	G	D	A	R	R	A	L	N	T	L	E	M	M	A	D	M	A	E	V	D	D	S	G	K	R	V	L	K	P	E	L
Query Conservation
Alig confidence																											.	.	.	.	.	.	.																																									.	.	.
Template Conservation																											.	.	.	.	.	.	.																																									.	.	.
Template Sequence		G	L	V	A	K	L	E	P	P	D	E	E	T	R	K	S	I	A	R	K	M	L	E	I	E	.	.	.	.	.	.	.	H	G	E	L	P	E	E	V	L	N	F	V	A	E	N	V	D	D	N	L	R	R	L	R	G	A	I	I	K	L	L	V	Y	K	E	T	T	G	K	E	.	.	.	V	D	L	K	E
Template Known Secondary structure		S																									.	.	.	.	.	.	.	T					T	T											S																			S	S	S		.	.	.
Template Predicted Secondary structure																											.	.	.	.	.	.	.																																									.	.	.
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.								280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.				320	.	.	.	.
		237	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	E	I	A	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	L	L	L	K	D
Template Known Secondary structure						T	G	G
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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