 |
Job Description | P0AAZ4 | Confidence | 96.80% | Date | Thu Jan 5 11:14:11 GMT 2012 |
Rank | 330 | Aligned Residues | 91 |
% Identity | 19% | Template | c2xgjA_ |
PDB info |
PDB header:hydrolase/rna | Chain: A: PDB Molecule:atp-dependent rna helicase dob1; |
PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance
|
Resolution | 2.90 Å |
|
 |
  |   |
52 | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | |
|
|
. | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  | . | . | . |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
S | M | I | L | W | G | P | P | G | T | G | K | T | T | L | A | E | V | I | . |
. |
. |
A | R | Y | A | N | A | D | V | E | R | I | S | A | V | T | S | G | V | K | E | I | R | E | A | I | E | R | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
|
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|   |
|
| . | . | . |
|   |   |
|   |   |   |   |
|
|
|
|
|
|   |   |   |   |   |
|
|
|   |
|
|   |   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |
|
|
|   |
|
|
|
|
|
|
|
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |   |
|   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|   |
|   |   |   |
Template Sequence |   |
S | V | L | V | S | A | H | T | S | A | G | K | T | V | V | A | E | Y | A | I | A | Q | S | L | K | N | K | Q | R | V | I | Y | T | S | P | I | K | A | L | S | N | Q | K | Y | R | E | L | L | A | E | F | G | D | V | G | L | M | T | G | D | I | T | I | N | P | D | A | G | C | L | V | M | T | T | E | I | L | R | S | M |
Template Known Secondary structure |   |
 |  |  |  |  |
|
| T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
|  |  |  |  |
| S | S |
|  |  |
| T | T |
| S |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
166 | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . |
  |
  |   |
|
|
99 | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | |
|
|
|
120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . |
Predicted Secondary structure |   |
. | . |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|  |  |  |
|
| . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
Query SS confidence |   |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
R | Q | N | R | N | A | G | R | R | T | I | L | F | V | D | E | V | H | R | F | N | . |
. |
. |
. |
K | S | Q | Q | D | A | F | L | P | H | I | E | D | G | T | I | T | F | I | G | A | T | T |
Query Conservation |   |
. | . |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|   |   |
|   | . | . | . | . |
|   |   |
|
|   |
|
|   |   |
|
|   |
|   |   |   |
|
|   |
|
|
|
Alig confidence |   |
. | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |
|   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
Template Sequence |   |
L | Y | R | G | S | E | V | M | R | E | V | A | W | V | I | F | D | E | V | H | Y | M | R | D | K | E | R | G | V | V | W | E | E | T | I | I | L | L | P | D | K | V | R | Y | V | F | L | S | A | T |
Template Known Secondary structure |   |
 |  |  | T |
| T | T | G | G | G |  |  |  |  |  |  |  | T | G | G | G | G | G |
| T | T | T |  |  |  |  |  |  |  |  |  |  | S |
| T | T |
|  |  |  |  |  |  |
|
|
Template Predicted Secondary structure |   |
 |  |
|
|
|  |  |  |
|
|
|
|  |  |  |  |  |
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
246 | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|