Job Description P0AAZ4 Confidence 99.71% Date Thu Jan 5 11:14:11 GMT 2012 Rank 80 Aligned Residues 216 % Identity 14% Template c2x8aA_ PDB info PDB header:nuclear protein Chain: A: PDB Molecule:nuclear valosin-containing protein-like; PDBTitle: human nuclear valosin containing protein like (nvl), c-2 terminal aaa-atpase domain Resolution 2.60 Å

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		28	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.										.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.	90	.	.	.	.
Predicted Secondary structure														.									.	.	.	.	.	.	.	.	.																																							.	.	.
Query SS confidence														.									.	.	.	.	.	.	.	.	.																																							.	.	.
Query Sequence		Y	I	G	Q	Q	H	L	L	A	A	G	K	.	P	L	P	R	A	I	E	A	.	.	.	.	.	.	.	.	.	G	H	L	H	S	M	I	L	W	G	P	P	G	T	G	K	T	T	L	A	E	V	I	A	R	Y	A	N	A	D	V	E	R	I	S	A	V	T	.	.	.	S	G	V	K	E	I	R	E	A
Query Conservation														.									.	.	.	.	.	.	.	.	.																																							.	.	.
Alig confidence														.									.	.	.	.	.	.	.	.	.																																							.	.	.
Template Conservation
Template Sequence		I	G	A	L	E	D	I	R	E	E	L	T	M	A	I	L	A	P	V	R	N	P	D	Q	F	K	A	L	G	L	V	T	P	A	G	V	L	L	A	G	P	P	G	C	G	K	T	L	L	A	K	A	V	A	N	E	S	G	L	N	F	I	S	V	K	G	P	E	L	L	N	M	Y	V	G	E	S	E	R	A
Template Known Secondary structure																	T					S							T	T					S						S	S	T	T	S													T	T								T	T	T	T		S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.					.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.																																								.	.	.
Query SS confidence																										.	.	.	.																																								.	.	.
Query Sequence		I	E	R	A	R	Q	N	R	N	A	G	R	R	T	I	L	F	V	D	E	V	H	R	F	.	.	.	.	N	K	S	Q	Q	D	A	F	L	P	H	I	E	D	G	T	I	T	F	I	G	A	T	T	E	N	P	S	F	E	L	N	S	A	L	L	S	R	A	.	.	.	R	V	Y	L	L	K	S	L	S	T
Query Conservation																										.	.	.	.																																								.	.	.
Alig confidence																										.	.	.	.																																								.	.	.
Template Conservation
Template Sequence		V	R	Q	V	F	Q	R	A	K	N	S	A	P	C	V	I	F	F	D	E	V	D	A	L	C	P	S	V	R	V	V	N	Q	L	L	T	E	M	D	G	L	E	A	R	Q	Q	V	F	I	M	A	A	T	N	R	P	D	I	I	D	P	A	I	L	R	P	G	R	L	D	K	T	L	F	V	G	L	P	P	P
Template Known Secondary structure												T		S							T		T	T	T				T	T											T			S	T	T									S		G	G	G	S						S	T	T	S	S								S
Template Predicted Secondary structure
Template SS confidence
		663	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	I	E	Q	V	L	T	Q	A	M	E	D	K	T	R	G	Y	G	G	Q	D	I	V	L	P	D	E	T	R	R	A	I	A	E	L	V	N	G	D	A	R	R	A	L	N	T	L	E	M	M	A	D	M	A	E	V	D	D	S	G	K	R	V	L	K	P	E	L	L	T	E	I	A	G	E	R	S	A	R
Query Conservation
Alig confidence																.	.																																															.	.
Template Conservation																.	.																																															.	.
Template Sequence		A	D	R	L	A	I	L	K	T	I	T	K	N	G	.	.	T	K	P	P	L	D	A	D	V	N	L	E	A	I	A	G	D	L	R	C	D	C	Y	T	G	A	D	L	S	A	L	V	R	E	A	S	I	C	A	L	R	Q	E	M	L	K	.	.	V	S	H	K	H	F	E	E	A	F	K	K	V	R	S	S
Template Known Secondary structure												T	T	T	T	.	.	B	T	T	B	B		T	T								T		S	G	G	G	S																									.	.	B										T	T
Template Predicted Secondary structure																.	.																																															.	.
Template SS confidence
		752	.	.	.	.	.	.	.	760	.	.	.	.	.			.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.			.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions