Job Description P0AAZ4 Confidence 99.60% Date Thu Jan 5 11:14:11 GMT 2012 Rank 92 Aligned Residues 233 % Identity 19% Template c2qbyB_ PDB info PDB header:replication/dna Chain: B: PDB Molecule:cell division control protein 6 homolog 3; PDBTitle: crystal structure of a heterodimer of cdc6/orc1 initiators2 bound to origin dna (from s. solfataricus) Resolution 3.35 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.												.	.	.	.	.	80	.	.	.	.	.				.	.	.	.
Predicted Secondary structure																	.																																				.	.	.	.	.	.	.	.	.	.	.												.	.	.
Query SS confidence																	.																																				.	.	.	.	.	.	.	.	.	.	.												.	.	.
Query Sequence		L	A	Q	Y	I	G	Q	Q	H	L	L	A	A	G	K	.	P	L	P	R	A	I	E	A	G	H	L	H	S	M	I	L	W	G	P	P	G	T	G	K	T	T	L	A	E	V	I	A	R	Y	A	.	.	.	.	.	.	.	.	.	.	.	N	A	D	V	E	R	I	S	A	V	T	.	.	.	S	G	V	K
Query Conservation																	.																																				.	.	.	.	.	.	.	.	.	.	.												.	.	.
Alig confidence																	.																																				.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Conservation
Template Sequence		F	K	E	I	P	F	R	E	D	I	L	R	D	A	A	I	A	I	R	Y	F	V	K	N	E	V	K	F	S	N	L	F	L	G	L	T	G	T	G	K	T	F	V	S	K	Y	I	F	N	E	I	E	E	V	K	K	E	D	E	E	Y	K	D	V	K	Q	A	Y	V	N	C	R	E	V	G	G	T	P	Q	A
Template Known Secondary structure			S	S		T	T																	T	T												T	T	S	S																			S	S	S	S	T	T													S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.																			.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.				.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.																														.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.																														.	.	.
Query Sequence		E	I	R	E	A	I	E	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	N	R	N	A	G	R	R	T	I	L	F	V	D	E	V	H	R	.	F	N	K	S	Q	Q	D	A	F	L	P	H	I	E	D	G	T	I	T	F	I	G	A	T	T	E	N	P	S	.	.	.	F
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.																														.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.																														.	.	.
Template Conservation
Template Sequence		V	L	S	S	L	A	G	K	L	T	G	F	S	V	P	K	H	G	I	N	L	G	E	Y	I	D	K	I	K	N	G	T	R	N	I	R	A	I	I	Y	L	D	E	V	D	T	L	V	K	R	R	G	G	D	I	V	L	Y	Q	L	L	R	S	D	A	N	I	S	V	I	M	I	S	N	D	I	N	V	R	D
Template Known Secondary structure													S				S	S	S	S		T												S	S	S								T	T						S	T	T	S									T	S	S	S									S	S	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		148	.	150	.	.	.	.	.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure												.																																																.	.	.
Query SS confidence												.																																																.	.	.
Query Sequence		E	L	N	S	A	L	L	S	R	A	.	R	V	Y	L	L	K	S	L	S	T	E	D	I	E	Q	V	L	T	Q	A	M	E	D	K	T	R	G	Y	G	G	Q	D	I	V	L	P	D	E	T	R	R	A	I	A	E	L	V	.	.	.	N	G	D	A	R	R	A	L	N	T	L	E	M	M	A	D	M	A	E
Query Conservation												.																																																.	.	.
Alig confidence												.																								.	.	.	.	.																				.	.	.
Template Conservation																																				.	.	.	.	.
Template Sequence		Y	M	E	P	R	V	L	S	S	L	G	P	S	V	I	F	K	P	Y	D	A	E	Q	L	K	F	I	L	S	K	Y	A	E	Y	.	.	.	.	.	G	L	I	K	G	T	Y	D	D	E	I	L	S	Y	I	A	A	I	S	A	K	E	H	G	D	A	R	K	A	V	N	L	L	F	R	A	A	Q	L	A	S
Template Known Secondary structure		T	S							T																										.	.	.	.	.	T	S		T	T	S			S												T	T																		T	T
Template Predicted Secondary structure																																				.	.	.	.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.						.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	D	S	G	K	R	V	L	K	P	E	L	L	T	E	I	A	G	E	R	S	A	R	F	D	N	K	G	D	R	F	Y	D	L	I	S	A	L	H	K	S	V	R	G	S	A	P	D	A	A	L	Y	W	Y	A
Query Conservation
Alig confidence						.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	G	I	.	.	.	.	I	R	K	E	H	V	D	K	A	I	V	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	E	Q	E	R	L	I	E	A	V	K	A	L	P	F	H	Y	K	L	A	L	R	S
Template Known Secondary structure		S	S	S		.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.											S	S
Template Predicted Secondary structure						.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		264	.	.	.					.	.	270	.	.	.	.	.	.	.	.	.	280														.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions