Job Description P0AAZ4 Confidence 99.97% Date Thu Jan 5 11:14:11 GMT 2012 Rank 19 Aligned Residues 302 % Identity 19% Template c2chvE_ PDB info PDB header:dna-binding protein Chain: E: PDB Molecule:replication factor c small subunit; PDBTitle: replication factor c adpnp complex Resolution 4.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.						.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																																																												.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.
Query Sequence		L	A	A	R	M	R	P	E	N	L	A	Q	Y	I	G	Q	Q	H	L	L	A	A	G	K	P	L	P	R	A	I	E	A	G	H	L	H	S	M	I	L	W	G	P	P	G	T	G	K	T	T	L	A	E	V	I	A	R	Y	.	.	.	.	.	A	N	A	D	V	E	R	I	S	A	V	T	S	G	V	K	E
Query Conservation																																																												.	.	.	.	.
Alig confidence																								.	.	.																																		.	.	.	.	.
Template Conservation																								.	.	.
Template Sequence		W	V	E	K	Y	R	P	R	T	L	D	E	V	V	G	Q	D	E	V	I	Q	R	.	.	.	L	K	G	Y	V	E	R	K	N	I	P	H	L	L	F	S	G	P	P	G	T	G	K	T	A	T	A	I	A	L	A	R	D	L	F	G	E	N	W	R	D	N	F	I	E	M	N	A	S	D	E	R	G	I	D
Template Known Secondary structure						T			S	S	G	G	G			S								.	.	.		G	G	G	T	T	T	T											T	T	S	S														T	T			T	T	T						T	T	S	T	T	S	T	T
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.				.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
					91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	I	R	E	A	I	E	R	A	R	Q	N	R	N	A	G	R	R	T	I	L	F	V	D	E	V	H	R	F	N	K	S	Q	Q	D	A	F	L	P	H	I	E	D	G	T	I	T	F	I	G	A	T	T	E	N	P	S	F	E	L	N	S	A	L	L	S	R	A	R	V	Y	L	L	K	S	L	S	T
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		V	V	R	H	K	I	K	E	F	A	R	T	A	P	I	G	G	A	P	F	K	I	I	F	L	D	E	A	D	A	L	T	A	D	A	Q	A	A	L	R	R	T	M	E	M	Y	S	K	S	C	R	F	I	L	S	C	N	Y	V	S	R	I	I	E	P	I	Q	S	R	C	A	V	F	R	F	K	P	V	P	K
Template Known Secondary structure		T	S	S									S			T	T	T										T	G	G	G	S							T	T	G	G	G	T	S	S	S	S	S	S								S		G	G	G	S						T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	I	E	Q	V	L	T	Q	A	M	E	D	K	T	R	G	Y	G	G	Q	D	I	V	L	P	D	E	T	R	R	A	I	A	E	L	V	N	G	D	A	R	R	A	L	N	T	L	E	M	M	A	D	M	A	E	V	D	D	S	G	K	R	V	L	K	P	E	L	L	T	E	I	A	G	E	R	S	A	R
Query Conservation
Alig confidence																.	.	.	.	.	.	.																																					.	.	.	.	.	.	.														.	.	.
Template Conservation																.	.	.	.	.	.	.																																					.	.	.	.	.	.	.														.	.	.
Template Sequence		E	A	M	K	K	R	L	L	E	I	C	E	K	E	.	.	.	.	.	.	.	G	V	K	I	T	E	D	G	L	E	A	L	I	Y	I	S	G	G	D	F	R	K	A	I	N	A	L	Q	G	A	A	A	I	G	E	V	.	.	.	.	.	.	.	V	D	A	D	T	I	Y	Q	I	T	A	T	A	.	.	.
Template Known Secondary structure														T	T	.	.	.	.	.	.	.	T			B													T	T														S	S	S	S		.	.	.	.	.	.	.	B									T	T			.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.																																					.	.	.	.	.	.	.														.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.								.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.								.	.	.	.	.	.	220	.	.	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.		.
Predicted Secondary structure																																							.																																									.
Query SS confidence																																							.																																									.
Query Sequence		F	D	N	K	G	D	R	F	Y	D	L	I	S	A	L	H	K	S	V	R	G	S	A	P	D	A	A	L	Y	W	Y	A	R	I	I	T	A	.	G	G	D	P	L	Y	V	A	R	R	C	L	A	I	A	S	E	D	V	G	N	A	D	P	R	A	M	Q	V	A	I	A	A	W	D	C	F	T	R	V	.	G
Query Conservation																																							.																																									.
Alig confidence		.	.	.	.	.	.	.																															.																.																									.
Template Conservation		.	.	.	.	.	.	.																																															.
Template Sequence		.	.	.	.	.	.	.	R	P	E	E	M	T	E	L	I	Q	T	A	L	K	G	N	F	M	E	A	R	E	L	L	D	R	L	M	V	E	Y	G	M	S	G	E	D	I	V	A	Q	L	F	R	E	I	.	I	S	M	P	I	K	D	S	L	K	V	Q	L	I	D	K	L	G	E	V	D	F	R	L	T	E
Template Known Secondary structure		.	.	.	.	.	.	.															T																S																.		S	S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.																																															.
Template SS confidence
									227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	E	G	E	R	A	I	A	Q	A	I	V	Y	L	A	C	A	P	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	N	E	R	I	Q	L	D	A	Y	L	A	Y	L	S	T	L	A	K
Template Known Secondary structure		T															T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions