Job Description P0AAZ4 Confidence 99.74% Date Thu Jan 5 11:14:11 GMT 2012 Rank 76 Aligned Residues 211 % Identity 15% Template c2c99A_ PDB info PDB header:transcription regulation Chain: A: PDB Molecule:psp operon transcriptional activator; PDBTitle: structural basis of the nucleotide driven conformational2 changes in the aaa domain of transcription activator pspf Resolution 1.9 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.				.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																																	.	.	.																											.	.	.	.
Query SS confidence																																																	.	.	.																											.	.	.	.
Query Sequence		Y	I	G	Q	Q	H	L	L	A	A	G	K	P	L	P	R	A	I	E	A	G	H	L	H	S	M	I	L	W	G	P	P	G	T	G	K	T	T	L	A	E	V	I	A	R	Y	A	.	.	.	N	A	D	V	E	R	I	S	A	V	T	S	G	V	K	E	I	R	E	A	I	E	R	A	R	Q	.	.	.	.
Query Conservation																																																	.	.	.																											.	.	.	.
Alig confidence																								.																									.	.	.																											.	.	.	.
Template Conservation																								.
Template Sequence		L	L	G	E	A	N	S	F	L	E	V	L	E	Q	V	S	H	L	A	P	L	D	.	K	P	V	L	I	I	G	E	R	G	T	G	K	E	L	I	A	S	R	L	H	Y	L	S	S	R	W	Q	G	P	F	I	S	L	N	C	A	A	L	N	E	N	L	L	D	S	E	L	F	G	H	E	A	K	R	H	P
Template Known Secondary structure																				T	T	S		.	S								T	T	S	S											T	S	T	T	T	T	S							G	G	G	S												B					B
Template Predicted Secondary structure																								.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
			101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.																			.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure		.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	N	R	N	A	G	R	R	T	I	L	F	V	D	E	V	H	R	F	N	K	S	Q	Q	D	A	F	L	P	H	I	E	D	G	T	I	T	F	I	G	A	T	T	E	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	F	E	L	N	S	A	L	L	S	R	A	R	V	Y	L
Query Conservation		.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	R	F	E	R	A	D	G	G	T	L	F	L	D	E	L	A	T	A	P	M	M	V	Q	E	K	L	L	R	V	I	E	Y	G	E	L	E	R	V	G	G	S	Q	P	L	Q	V	N	V	R	L	V	C	A	T	N	A	D	L	P	A	M	V	N	E	G	T	F	R	A	D	L	L	D	R	L	A	F	D	V
Template Known Secondary structure							T	T	T	S						S	G	G	G	S															S						S	S	S														S	S									T	S	S										S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		162	.	.	.					.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure						.	.	.	.																										.															.
Query SS confidence						.	.	.	.																										.															.
Query Sequence		L	K	S	L	.	.	.	.	S	T	E	D	I	E	Q	V	L	T	Q	A	M	E	D	K	T	R	G	Y	G	G	Q	D	I	.	V	L	P	D	E	T	R	R	A	I	A	E	L	V	.	N	G	D	A	R	R	A	L	N	T	L	E	M	M	A	D	M	A	E	V	D	D	S	G	K	R	V	L	K	P	E
Query Conservation						.	.	.	.																										.															.
Alig confidence						.	.	.	.																										.															.
Template Conservation
Template Sequence		V	Q	L	P	P	L	R	E	R	E	S	D	I	M	L	M	A	E	Y	F	A	I	Q	M	C	R	E	I	K	L	P	L	F	P	G	F	T	E	R	A	R	E	T	L	L	N	Y	R	W	P	G	N	I	R	E	L	K	N	V	V	E	R	S	V	Y	R	H	G	T	S	D	Y	P	L	D	D	I	I	I	D
Template Known Secondary structure							G	G	G	S																			T	T		S	S				B											S			T	T																			S	S	S		B					S
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		236	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	F	K	R
Template Known Secondary structure		T	T	T
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions