Job Description P0AAZ4 Confidence 98.21% Date Thu Jan 5 11:14:11 GMT 2012 Rank 119 Aligned Residues 236 % Identity 14% Template c1z6tC_ PDB info PDB header:apoptosis Chain: C: PDB Molecule:apoptotic protease activating factor 1; PDBTitle: structure of the apoptotic protease-activating factor 12 bound to adp Resolution 2.21 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.			.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.									.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure																												.	.																												.	.	.	.	.	.	.	.
Query SS confidence																												.	.																												.	.	.	.	.	.	.	.
Query Sequence		P	E	N	L	A	Q	Y	I	G	Q	Q	H	L	L	A	A	G	K	P	L	P	R	A	I	E	A	.	.	G	H	L	H	S	M	I	L	W	G	P	P	G	T	G	K	T	T	L	A	E	V	I	A	R	Y	A	.	.	.	.	.	.	.	.	N	A	D	V	E	R	I	S	A	V	T	S	G	V	K	E	I
Query Conservation																												.	.																												.	.	.	.	.	.	.	.
Alig confidence																		.	.	.								.	.																												.	.	.	.	.	.	.	.
Template Conservation																		.	.	.
Template Sequence		P	Q	R	P	V	V	F	V	T	R	K	K	L	V	N	A	.	.	.	I	Q	Q	K	L	S	K	L	K	G	E	P	G	W	V	T	I	H	G	M	A	G	C	G	K	S	V	L	A	A	E	A	V	R	D	H	S	L	L	E	G	C	F	P	G	G	V	H	W	V	S	V	G	K	Q	D	K	S	G	L	L
Template Known Secondary structure						S	S											.	.	.						T	T	S	T	T	S										T	T	S	S																				T	T									S
Template Predicted Secondary structure																		.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.																		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	A	I	E	R	A	R	Q	N	R	N	A	G	R	R	T	I	L	F	V	D	E	V	H	R	F	N	K	S	Q	Q	D	A	F	L	P	H	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	T	I	T	F	I	G	A	T	T	E	N	P	S	F	E	L	N	S	A	L	L
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																																																																											.
Template Sequence		M	K	L	Q	N	L	C	T	R	L	D	Q	D	E	S	F	S	Q	R	L	P	L	N	I	E	E	A	K	D	R	L	R	I	L	M	L	R	K	H	P	R	S	L	L	I	L	D	D	V	W	D	S	W	V	L	K	A	F	D	S	Q	C	Q	I	L	L	T	T	R	D	K	S	V	.	T	D	S	V	M	G
Template Known Secondary structure												T	T	T			S		S	S				S															T		T	T																T	T		S	S								S		G	G	G	.	G	T	T			S
Template Predicted Secondary structure																																																																											.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	A	R	V	Y	L	L	K	S	L	S	T	E	D	I	E	Q	V	L	T	Q	A	M	E	D	K	T	R	G	Y	G	G	Q	D	I	V	L	P	D	E	T	R	R	A	I	A	E	L	V	N	G	D	A	R	R	A	L	N	T	L	E	M	M	A	D	M	A	E	V	D	D	S	G	K	R	V	L	K	P
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template Sequence		P	K	Y	V	V	P	V	E	S	S	L	G	K	E	K	G	L	E	I	L	S	L	F	V	N	M	.	.	.	.	.	.	.	.	K	K	A	D	L	P	E	Q	A	H	S	I	I	K	E	C	K	G	S	P	L	V	V	S	L	I	G	A	L	L	R	D	F	P	.	.	.	.	.	.	.	.	.	N	R	W
Template Known Secondary structure										S	S															T	S	.	.	.	.	.	.	.	.		G	G	G	S		T										T	T															S	T	.	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.									.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.										.	.	.
		235	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		E	L	L	T	E	I	A	G	E	R	.	.	S	A	R	F	D	N	K	G	D	R	F	Y	D	L	I	S	A	L	H	K	S	V	R	G	S	A	P	D	A	A	L	Y	W	Y
Query Conservation												.	.
Alig confidence												.	.
Template Conservation
Template Sequence		E	Y	Y	L	K	Q	L	Q	N	K	Q	F	K	R	I	R	K	S	S	S	Y	D	Y	E	A	L	D	E	A	M	S	I	S	V	E	M	L	R	E	D	I	K	D	Y	Y	T
Template Known Secondary structure										S						S	S			S	S																T	S
Template Predicted Secondary structure
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions