Job Description P0AAZ4 Confidence 100.00% Date Thu Jan 5 11:14:11 GMT 2012 Rank 14 Aligned Residues 303 % Identity 14% Template c1sxjE_ PDB info PDB header:replication Chain: E: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.											.
Predicted Secondary structure																																							.																																.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.																																.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	A	R	M	R	P	E	N	L	A	Q	Y	I	G	Q	Q	H	L	L	A	A	G	K	P	L	P	R	A	I	E	A	G	H	L	H	S	.	M	I	L	W	G	P	P	G	T	G	K	T	T	L	A	E	V	I	A	R	Y	A	N	A	D	V	E	R	I	S	A	.	.	.	.	.	.	.	.	.	.	V
Query Conservation																																							.																																.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.													.																																.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.
Template Sequence		W	V	D	K	Y	R	P	K	S	L	N	A	L	S	H	N	E	E	L	T	N	F	.	.	.	L	K	S	L	S	D	Q	P	R	D	L	P	H	L	L	L	Y	G	P	N	G	T	G	K	K	T	R	C	M	A	L	L	E	S	I	F	G	P	G	V	Y	R	N	V	V	S	S	P	Y	H	L	E	I	T	P
Template Known Secondary structure			T	T	T	T				S	G	G	G			S								.	.	.			T	T	T	T		T	T										S	T	T	S	S							T						S		T	T									S	S
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	G	V	K	E	I	R	E	A	I	E	R	A	R	Q	N	R	N	A	G	R	R	T	I	L	F	V	D	E	V	H	R	F	N	K	S	Q	Q	D	A	F	L	P	H	I	E	D	G	T	I	T	F	I	G	A	T	T	E	N	P	S	F	E	L	N	S	A	L	L	S	R	A	R	V	Y	L	L	K	S
Query Conservation
Alig confidence																				.	.
Template Conservation																				.	.
Template Sequence		S	N	D	R	I	V	I	Q	E	L	L	K	E	V	A	Q	M	E	.	.	Q	R	Y	K	C	V	I	I	N	E	A	N	S	L	T	K	D	A	Q	A	A	L	R	R	T	M	E	K	Y	S	K	N	I	R	L	I	M	V	C	D	S	M	S	P	I	I	A	P	I	K	S	Q	C	L	L	I	R	C	P	A
Template Known Secondary structure																T	T	T	T	.	.											T	T	S	S															S	T	T	T								S		S		S	S						T	T	S
Template Predicted Secondary structure																				.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	T	E	D	I	E	Q	V	L	T	Q	A	M	E	D	K	T	R	G	Y	G	G	Q	D	I	V	L	P	D	E	T	R	R	A	I	A	E	L	V	N	G	D	A	R	R	A	L	N	T	L	E	M	M	A	D	M	A	E	V	D	D	S	G	K	R	V	L	K	P	E	L	L	T	E	I	A	G	E	R
Query Conservation
Alig confidence																			.	.	.	.	.	.																																																							.	.	.
Template Conservation																			.	.	.	.	.	.																																																							.	.	.
Template Sequence		P	S	D	S	E	I	S	T	I	L	S	D	V	V	T	N	E	.	.	.	.	.	.	R	I	Q	L	E	T	K	D	I	L	K	R	I	A	Q	A	S	N	G	N	L	R	V	S	L	L	M	L	E	S	M	A	L	N	N	E	L	A	L	K	S	S	S	P	I	I	K	P	D	W	I	I	V	I	.	.	.
Template Known Secondary structure																			.	.	.	.	.	.	T						S											T	T										T					T	T	T	T				S	S													.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.																																																							.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.							210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	R	F	D	N	K	G	D	R	F	Y	D	L	I	S	A	L	H	K	S	V	R	G	S	A	P	D	A	A	L	Y	W	Y	A	R	I	I	T	A	G	G	D	P	L	Y	V	A	R	R	C	L	A	I	A	S	E	D	V	G	N	A	D	P	R	A	M	Q	V	A	I	A	A	W	D	C	F	T	R	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	H	K	L	T	R	K	I	V	K	E	R	S	V	N	S	L	I	E	C	R	A	V	L	Y	D	L	L	A	H	C	I	P	A	N	I	I	L	K	E	L	T	F	S	L	L	D	V	E	T	L	N	T	T	N	K	S	S	I	I	E	Y	S	S	V	F	D	E	R	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.												S																T	T	T													T	T	T	T		T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		325	.		.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		G	P	.	A	E	G	E	R	A	I	A	Q	A	I	V	Y	L	A	C	A
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		S	L	G	N	K	A	I	F	H	L	E	G	F	I	A	K	V	M	C	C
Template Known Secondary structure			T		S
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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