Job Description P0AAZ4 Confidence 100.00% Date Thu Jan 5 11:14:11 GMT 2012 Rank 7 Aligned Residues 286 % Identity 22% Template c1sxjC_ PDB info PDB header:replication Chain: C: PDB Molecule:activator 1 40 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.						.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.
Query Sequence		P	L	A	A	R	M	R	P	E	N	L	A	Q	Y	I	G	Q	Q	H	L	L	A	A	G	K	P	L	P	R	A	I	E	A	G	H	L	H	S	M	I	L	W	G	P	P	G	T	G	K	T	T	L	A	E	V	I	A	R	Y	A	N	A	D	.	.	.	.	.	V	E	R	I	S	A	V	T	S	G	V	K
Query Conservation																																																																	.	.	.	.	.
Alig confidence																									.	.	.																																						.	.	.	.	.
Template Conservation																									.	.	.
Template Sequence		P	W	V	E	K	Y	R	P	E	T	L	D	E	V	Y	G	Q	N	E	V	I	T	T	.	.	.	V	R	K	F	V	D	E	G	K	L	P	H	L	L	F	Y	G	P	P	G	T	G	K	T	S	T	I	V	A	L	A	R	E	I	Y	G	K	N	Y	S	N	M	V	L	E	L	N	A	S	D	D	R	G	I
Template Known Secondary structure							T			S	S	G	G	G			S								.	.	.							T	T										S	S	S	S	S														T	T	S										T	T	S			S
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.				.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		90	.	.	.	.	.	.	.	.	.	100	.	.	.				.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		E	I	R	E	A	I	E	R	A	R	Q	N	R	N	.	.	.	A	G	R	R	T	I	L	F	V	D	E	V	H	R	F	N	K	S	Q	Q	D	A	F	L	P	H	I	E	D	G	T	I	T	F	I	G	A	T	T	E	N	P	S	F	E	L	N	S	A	L	L	S	R	A	R	V	Y	L	L	K	S	L	S
Query Conservation																.	.	.
Alig confidence																.	.	.
Template Conservation
Template Sequence		D	V	V	R	N	Q	I	K	D	F	A	S	T	R	Q	I	F	S	K	G	F	K	L	I	I	L	D	E	A	D	A	M	T	N	A	A	Q	N	A	L	R	R	V	I	E	R	Y	T	K	N	T	R	F	C	V	L	A	N	Y	A	H	K	L	T	P	A	L	L	S	Q	C	T	R	F	R	F	Q	P	L	P
Template Known Secondary structure						T								S			S	S	S		S							T	T	G	G	G	S															T	T	T	T								S		G	G	G	S						T	T	S
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	D	I	E	Q	V	L	T	Q	A	M	E	D	K	T	R	G	Y	G	G	Q	D	I	V	L	P	D	E	T	R	R	A	I	A	E	L	V	N	G	D	A	R	R	A	L	N	T	L	E	M	M	A	D	M	A	E	V	D	D	S	G	K	R	V	L	K	P	E	L	L	T	E	I	A	G	E	R	S	A
Query Conservation
Alig confidence																	.	.	.	.	.	.	.																																										.	.											.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.																																										.	.											.	.	.	.	.
Template Sequence		Q	E	A	I	E	R	R	I	A	N	V	L	V	H	E	.	.	.	.	.	.	.	K	L	K	L	S	P	N	A	E	K	A	L	I	E	L	S	N	G	D	M	R	R	V	L	N	V	L	Q	S	C	K	A	T	L	D	N	P	D	E	D	E	.	.	I	S	D	D	V	I	Y	E	C	C	.	.	.	.	.
Template Known Secondary structure															T	T	.	.	.	.	.	.	.	T			B													T	T									T	T	T	T	T	T	T	T		S	S	S				.	.	B									T	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.	.	.	.	.																																										.	.											.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.								.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.			.	.	.	230	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																																								.
Query SS confidence																																								.
Query Sequence		R	F	D	N	K	G	D	R	F	Y	D	L	I	S	A	L	H	K	S	V	R	G	S	A	P	D	A	A	L	Y	W	Y	A	R	I	I	T	A	.	G	G	D	P	L	Y	V	A	R	R	C	L	A	I	A	S	E	D	V	G	N	A	D	P	R	A	M	Q	V	A	I	A	A	W	D	C	F	T	R
Query Conservation																																								.
Alig confidence		.	.	.	.	.																																		.																.
Template Conservation		.	.	.	.	.																																																		.
Template Sequence		.	.	.	.	.	G	A	P	R	P	S	D	L	K	A	V	L	K	S	I	L	E	D	D	W	G	T	A	H	Y	T	L	N	K	V	R	S	A	K	G	L	A	L	I	D	L	I	E	G	I	V	K	I	L	.	E	D	Y	E	L	Q	N	E	E	T	R	V	H	L	L	T	K	L	A	D	I	E	Y
Template Known Secondary structure		.	.	.	.	.	T																T	S															T	T	T															.	T	T	S			S	S
Template Predicted Secondary structure		.	.	.	.	.																																																		.
Template SS confidence
							237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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