Job Description P0AAZ4 Confidence 100.00% Date Thu Jan 5 11:14:11 GMT 2012 Rank 15 Aligned Residues 214 % Identity 18% Template c1sxjA_ PDB info PDB header:replication Chain: A: PDB Molecule:activator 1 95 kda subunit; PDBTitle: crystal structure of the eukaryotic clamp loader2 (replication factor c, rfc) bound to the dna sliding clamp3 (proliferating cell nuclear antigen, pcna) Resolution 2.85 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.														.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.								.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.								.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	P	L	A	A	R	M	R	P	E	N	L	A	Q	Y	I	G	Q	Q	H	L	L	A	A	G	K	.	P	L	P	R	A	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	H	L	H	S	M	I	L	W	G	P	P	G	T	G	K	T	T	L	A	E	V	I	A	R	Y	A	N	A	D	V	E
Query Conservation																												.								.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	W	T	V	K	Y	A	P	T	N	L	Q	Q	V	C	G	N	K	G	S	V	M	K	L	K	N	W	L	A	N	W	E	N	S	K	K	N	S	F	K	H	A	G	K	D	G	S	G	V	F	R	A	A	M	L	Y	G	P	P	G	I	G	K	T	T	A	A	H	L	V	A	Q	E	L	G	Y	D	I	L
Template Known Secondary structure								T			S	S	G	G	G			S														T							T	T	T					T	T	S	T	T	S		S							S	T	T	S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.											.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.				.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure									.													.	.	.	.	.	.	.	.	.	.																								.	.	.
Query SS confidence									.													.	.	.	.	.	.	.	.	.	.																								.	.	.
Query Sequence		R	I	S	A	V	T	S	.	G	V	K	E	I	R	E	A	I	E	R	A	.	.	.	.	.	.	.	.	.	.	R	Q	N	R	N	A	G	R	R	T	I	L	F	V	D	E	V	H	R	F	N	K	S	.	.	.	Q	Q	D	A	F	L	P	H	I	E	D	G	T	I	T	F	I	G	A	T	T	E	N	P
Query Conservation									.													.	.	.	.	.	.	.	.	.	.																								.	.	.
Alig confidence									.													.	.	.	.	.	.	.	.	.	.																								.	.	.
Template Conservation
Template Sequence		E	Q	N	A	S	D	V	R	S	K	T	L	L	N	A	G	V	K	N	A	L	D	N	M	S	V	V	G	Y	F	K	H	Q	N	L	N	G	K	H	F	V	I	I	M	D	E	V	D	G	M	S	G	G	D	R	G	G	V	G	Q	L	A	Q	F	C	R	K	T	S	T	P	L	I	L	I	C	N	E	R	N
Template Known Secondary structure					T	T	S										T	G	G	G	G	T	T				S	T	T	T	T	T				S	S	T	T	S							S	G	G	G			T	T	S	T	T													S	S							S		T	T
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	E	L	N	S	A	L	L	S	R	A	R	V	Y	L	L	K	S	L	S	T	E	D	I	E	Q	V	L	T	Q	A	M	E	D	K	T	R	G	Y	G	G	Q	D	I	V	L	P	D	E	T	R	R	A	I	A	E	L	V	N	G	D	A	R	R	A	L	N	T	L	E	M	M	A	D	M	A	E	V	D
Query Conservation
Alig confidence			.																																			.	.	.	.	.	.	.																																					.
Template Conservation			.																																			.	.	.	.	.	.	.																																					.
Template Sequence		L	.	P	K	M	R	P	F	D	R	V	C	L	D	I	Q	F	R	R	P	D	A	N	S	I	K	S	R	L	M	T	I	A	I	R	E	.	.	.	.	.	.	.	K	F	K	L	D	P	N	V	I	D	R	L	I	Q	T	T	R	G	D	I	R	Q	V	I	N	L	L	S	T	I	S	T	T	T	K	T	.
Template Known Secondary structure		S	.	S	T	T	G	G	G	T	T	T	S																									.	.	.	.	.	.	.	T					T	T									T	T	T										T						S	S		.
Template Predicted Secondary structure			.																																			.	.	.	.	.	.	.																																					.
Template SS confidence
		460		.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.								.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	G	K	R	V	L	K	P	E	L	L	T	E	I	A	G
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	I	N	H	E	N	I	N	E	I	S	K
Template Known Secondary structure		.	.	.	.	.	.			T	T
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								531	.	.	.	.	.	.	.	.	540	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions