Job Description P0AAZ4 Confidence 99.78% Date Thu Jan 5 11:14:11 GMT 2012 Rank 70 Aligned Residues 230 % Identity 17% Template c1s3sA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:transitional endoplasmic reticulum atpase (ter PDBTitle: crystal structure of aaa atpase p97/vcp nd1 in complex with2 p47 c Resolution 2.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.														.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	N	L	S	L	D	F	S	D	N	T	F	Q	P	L	A	A	R	M	R	P	E	N	L	A	Q	Y	I	G	Q	Q	H	L	L	A	A	G	K	P	L	P	R	A	I	E	A	.	.	.	.	.	.	.	.	.	.	.	.	.	G	H	L	H	S	M	I	L	W	G	P	P	G	T	G	K	T	T	L	A	E
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.
Template Sequence		T	V	I	H	C	E	G	E	P	I	K	R	E	D	E	E	E	S	L	N	E	V	G	Y	D	D	V	G	G	C	R	K	Q	L	A	Q	.	.	.	I	K	E	M	V	E	L	P	L	R	H	P	A	L	F	K	A	I	G	V	K	P	P	R	G	I	L	L	Y	G	P	P	G	T	G	K	T	L	I	A	R
Template Known Secondary structure								S			B				T	T				T	T	S			G	G	G			S								.	.	.												T	T																		S	T	T	S	S
Template Predicted Secondary structure																																						.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.												.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																			.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	I	A	R	Y	A	N	A	D	V	E	R	I	S	A	V	T	.	.	.	S	G	V	K	E	I	R	E	A	I	E	R	A	R	Q	N	R	N	A	G	R	R	T	I	L	F	V	D	E	V	H	R	F	.	.	.	.	.	.	.	.	.	.	.	N	K	S	Q	Q	D	A	F	L	P	H	I	E	D	G	T
Query Conservation																			.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.																																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	A	N	E	T	G	A	F	F	F	L	I	N	G	P	E	I	M	S	K	L	A	G	E	S	E	S	N	L	R	K	A	F	E	E	A	E	K	N	A	P	A	I	I	F	I	D	E	L	D	A	I	A	P	K	R	E	K	T	H	G	E	V	E	R	R	I	V	S	Q	L	L	T	L	M	D	G	L	K
Template Known Secondary structure								T													T	S		T	T																T		S							T	G	G	G	T				S	S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		135			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.		.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.		.
Predicted Secondary structure			.	.																				.	.				.																																								.											.
Query SS confidence			.	.																				.	.				.																																								.											.
Query Sequence		I	.	.	T	F	I	G	A	T	T	E	N	P	S	F	E	L	N	S	A	L	L	.	.	S	R	A	.	R	V	Y	L	L	K	S	L	S	T	E	D	I	E	Q	V	L	T	Q	A	M	E	D	K	T	R	G	Y	G	G	Q	D	I	V	L	P	D	E	T	.	R	R	A	I	A	E	L	V	N	G	.	D
Query Conservation			.	.																				.	.				.																																								.											.
Alig confidence			.	.																				.	.				.																							.	.	.	.	.	.	.	.	.									.											.
Template Conservation																																																				.	.	.	.	.	.	.	.	.
Template Sequence		Q	R	A	H	V	I	V	M	A	A	T	N	R	P	N	S	I	D	P	A	L	R	R	F	G	R	F	D	R	E	V	D	I	G	I	P	D	A	T	G	R	L	E	I	L	Q	I	H	T	K	.	.	.	.	.	.	.	.	.	N	M	K	L	A	D	D	V	D	L	E	Q	V	A	N	E	T	H	G	H	V
Template Known Secondary structure		G	G	G									S		G	G	G	S		G	G	G	T	S	T	T	S	S																					T	T	T	.	.	.	.	.	.	.	.	.	T	S				T	T								T	T			S
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.										.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.																.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	R	A	L	N	T	L	E	M	M	A	D	M	A	E	V	D	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	R	V	L	K	P	E	L	L	T	E	I	A	G	E
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	D	L	A	A	L	C	S	E	A	A	L	Q	A	I	R	K	K	M	D	L	I	D	L	E	D	E	T	I	D	A	E	V	M	N	S	L	A	V	T	M	D	D	F	R	W	A	L	S	Q
Template Known Secondary structure																					T	T	T	T	T		S	S				B
Template Predicted Secondary structure
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions