Job Description P0AAZ4 Confidence 99.74% Date Thu Jan 5 11:14:11 GMT 2012 Rank 78 Aligned Residues 209 % Identity 15% Template c1ojlF_ PDB info PDB header:response regulator Chain: F: PDB Molecule:transcriptional regulatory protein zrar; PDBTitle: crystal structure of a sigma54-activator suggests the2 mechanism for the conformational switch necessary for3 sigma54 binding Resolution 3.0 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.				.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.																												.	.	.																									.	.	.	.	.
Query SS confidence																					.	.																												.	.	.																									.	.	.	.	.
Query Sequence		Y	I	G	Q	Q	H	L	L	A	A	G	K	P	L	P	R	A	I	E	.	.	A	G	H	L	H	S	M	I	L	W	G	P	P	G	T	G	K	T	T	L	A	E	V	I	A	R	Y	.	.	.	A	N	A	D	V	E	R	I	S	A	V	T	S	G	V	K	E	I	R	E	A	I	E	R	.	.	.	.	.
Query Conservation																					.	.																												.	.	.																									.	.	.	.	.
Alig confidence										.	.	.									.	.																												.	.	.																									.	.	.	.	.
Template Conservation										.	.	.
Template Sequence		M	I	G	S	S	P	A	M	.	.	.	Q	H	L	L	N	E	I	A	M	V	A	P	S	D	A	T	V	L	I	H	G	D	S	G	T	G	K	E	L	V	A	R	A	L	H	A	C	S	A	R	S	D	R	P	L	V	T	L	N	C	A	A	L	N	E	S	L	L	E	S	E	L	F	G	H	E	K	G	A
Template Known Secondary structure										.	.	.												S	T	T									T	T	S	S												S	S		S	S	S								T	T											T				S	S	S
Template Predicted Secondary structure										.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.				.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
						98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.																			.	.	150	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	A	R	Q	N	R	N	A	G	R	R	T	I	L	F	V	D	E	V	H	R	F	N	K	S	Q	Q	D	A	F	L	P	H	I	E	D	G	T	I	T	F	I	G	A	T	T	E	N	P	S	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	N	S	A	L	L	S
Query Conservation		.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	T	K	R	R	E	G	R	F	V	E	A	D	G	G	T	L	F	L	D	E	I	G	D	I	S	P	L	M	Q	V	R	L	L	R	A	I	Q	E	R	E	V	Q	R	V	G	S	N	Q	T	I	S	V	D	V	R	L	I	A	A	T	H	R	D	L	A	E	E	V	S	A	G	R	F	R	Q	D	L	Y	Y
Template Known Secondary structure									T	T	G	G	G	T	T	S							G	G	G															S	S					S	S	S															S	S									T	S	S
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.					.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure															.	.	.	.																																					.
Query SS confidence															.	.	.	.																																					.
Query Sequence		R	A	R	V	Y	L	L	K	S	L	S	T	E	.	.	.	.	D	I	E	Q	V	L	T	Q	A	M	E	D	K	T	R	G	Y	G	G	Q	D	I	V	L	P	D	E	T	R	R	A	I	A	E	L	V	.	N	G	D	A	R	R	A	L	N	T	L	E	M	M	A	D	M	A	E	V	D	D	S	G	K	R
Query Conservation															.	.	.	.																																					.
Alig confidence															.	.	.	.																																					.																							.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		R	L	N	V	V	A	I	E	M	P	S	L	R	Q	R	R	E	D	I	P	L	L	A	D	H	F	L	R	R	F	A	E	R	N	R	K	V	V	K	G	F	T	P	Q	A	M	D	L	L	I	H	Y	D	W	P	G	N	I	R	E	L	E	N	A	I	E	R	A	V	V	L	L	T	G	E	Y	.	.	.	.
Template Known Secondary structure					S								G	G	G	G	G	G	G																T	T						B														T	T																		S	S	S	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	K	P	E	L	L	T	E	I	A	G	E	R
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	I	S	E	R	E	L	P	L	A	I	A	A	T
Template Known Secondary structure		.	B		G	G	G	S		G	G	G
Template Predicted Secondary structure		.
Template SS confidence
			377	.	.	380	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions