Return to main results Retrieve Phyre Job Id

Job DescriptionP0AAZ4
Confidence99.92%DateThu Jan 5 11:14:11 GMT 2012
Rank32Aligned Residues297
% Identity17%Templatec1jr3E_
PDB info PDB header:transferaseChain: E: PDB Molecule:dna polymerase iii, delta' subunit; PDBTitle: crystal structure of the processivity clamp loader gamma2 complex of e. coli dna polymerase iii
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40.........50.. .......60.........70....... ..80.
Predicted Secondary structure 




.









............................
Query SS confidence 





















.
























. . . . . . . . . . . . . . . . . . . . . . . .



. . . .
Query Sequence  QQHLLAAGKPLPRAIEAGHLHS. MILWGPPGTGKTTLAEVIARYANAD. . . . . . . . . . . . . . . . . . . . . . . . VERI. . . .
Query Conservation 
  

     
   
      
.


 










 


  
   ........................ 


....
Alig confidence 






...











.
























........................



....
Template Conservation         ...
   
    
 

 

 
  
 

   
  

  
 
           
  
         
   
    
Template Sequence  LRPDFEK. . . LVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK
Template Known Secondary structure  ...TTTTTS


S

TTSST
SS

SSS

S
STS

SS


T
Template Predicted Secondary structure 
...

































Template SS confidence 















































































   7..10... ......20.........30.........40.........50.........60.........70.........80...
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
Predicted Secondary structure 


























Query SS confidence 















































































Query Sequence  SAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYL
Query Conservation 


     


 

  
          






  
 
  

 

  

 
   

 





   
  

 

   
 
Alig confidence 















































































Template Conservation      
 

 

 
             

 

  

     
 




 



      

 
     

 

 

   
 
Template Sequence  GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHY
Template Known Secondary structure  TSSSB
SS

TTSS
S
GGGB
S

TTS
STTS
TTTTTTS
Template Predicted Secondary structure 































Template SS confidence 















































































   84.....90.........100.........110.........120.........130.........140.........150.........160...
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
Predicted Secondary structure 



























Query SS confidence 















































































Query Sequence  LKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIA
Query Conservation 
  

 


  

   
           
 
 



  

  
 

 
 


 

 
   
         

 
 
   
Alig confidence 














............



































.......









Template Conservation              
 
............           
     
    
   
         .......     
    
Template Sequence  LAPPPEQYAVTWLSR. . . . . . . . . . . . EVTMSQDALLAALRLSAGSPGAALALFQGDNWQARE. . . . . . . TLCQALAYSV
Template Known Secondary structure 




............S


TTTT
SSS.......
Template Predicted Secondary structure 



............








.......
Template SS confidence 















































































   164.....170........ .180.........190.........200.........210.... .....220....
 
   242.......250.........260.........270.........280.........290.........300.........310.........320.
Predicted Secondary structure 
















Query SS confidence 















































































Query Sequence  GERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCF
Query Conservation        


 

 


 


  






 



  


 
  



  
 


   







 
 

  
     
 
Alig confidence 





.............





















..........




























Template Conservation        ............. 
     
      
  
    .......... 
 
                 
       
Template Sequence  PSGDWY. . . . . . . . . . . . . SLLAALNHEQAPARLHWLATLL. . . . . . . . . . MDALKRHHGAAQVTNVDVPGLVAELANHL
Template Known Secondary structure 

GG.............GG
STT..........TT
S

S
TT
S
Template Predicted Secondary structure 



.............


..........



Template SS confidence 















































































   225....230 .........240.........250.. .......260.........270.........280.
 
   322.......330.........340....... ..350.........360.........370..
Predicted Secondary structure 







..







Query SS confidence 

























. .
























Query Sequence  TRVGPAEGERAIAQAIVYLACAPKSN. . AVYTAFKAALADARERPDYDVPVHL
Query Conservation     
 

    

     

 




..  
 
   
           

 

Alig confidence 

























..
























Template Conservation      
      
      
    
 
  
 

 


 
               
Template Sequence  SPSRLQAILGDVCHIREQLMSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL
Template Known Secondary structure 
SSTT

SSTT







Template Predicted Secondary structure 
















Template SS confidence 




















































   282.......290.........300.........310.........320.........330....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions