Job Description P0AEX5 Confidence 98.63% Date Thu Jan 5 11:24:32 GMT 2012 Rank 60 Aligned Residues 167 % Identity 12% Template c2w0sB_ PDB info PDB header:transferase Chain: B: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of vaccinia virus thymidylate kinase2 bound to brivudin-5'-monophosphate Resolution 2.92 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	H	P	V	I	A	V	T	G	S	S	G	A	G	T	T	T	T	S	L	A	F	R	K	I	F	A	Q	L	N	L	H	A	A	E	V	E	G	D	S	F	H	R	Y	T	R	P	E	M	D	M	A	I	R	K	A	R	D	A	G	R	H	I	S	Y	F	G	P	E	A	N	D	F	G	L	L	E	Q	T	F
Query Conservation
Alig confidence																																		.	.
Template Conservation																																		.	.
Template Sequence		R	G	A	L	I	V	F	E	G	L	D	K	S	G	K	T	T	Q	C	M	N	I	M	E	S	I	P	A	N	T	I	K	.	.	Y	L	N	F	P	Q	R	S	T	V	T	G	K	M	I	D	D	Y	L	T	R	K	K	T	Y	N	D	H	I	V	N	L	L	F	C	A	N	R	W	E	F	A	S	F	I	Q
Template Known Secondary structure											S	T	T	S													S		T	T	S			.	.				S	S		T	T	S											T	T	S																		T	T
Template Predicted Secondary structure																																		.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.				.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																																	.	.	.
Query SS confidence																																																																	.	.	.
Query Sequence		I	E	Y	G	Q	S	G	K	G	K	S	R	K	Y	L	H	T	Y	D	E	A	V	P	W	N	Q	V	P	G	T	F	T	P	W	Q	P	L	P	E	P	T	D	V	L	F	Y	E	G	L	H	G	G	V	V	T	P	Q	H	N	V	A	Q	H	.	.	.	V	D	L	L	V	G	V	V	P	I	V	N	L	E
Query Conservation																																																																	.	.	.
Alig confidence											.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation											.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	Q	L	E	Q	G	I	T	L	.	.	.	I	V	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	F	S	G	V	A	Y	A	A	A	K	G	A	S	M	T	L	S	K	S	Y	E	S	G	L	P	K	P	D	L	V	I	F	L	E	S	G	S	K	E	I
Template Known Secondary structure						T	T				.	.	.				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T											T	T	S				S
Template Predicted Secondary structure											.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.				90	.	.	.																							.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	I	Q	K	L	I	R	D	T	S	E	R	G	H	S	R	E	A	V	M	D	S	V	V	R	S	M	E	D	Y	I	N	Y	I	T	P	Q	F	S	R	T	H
Query Conservation
Alig confidence					.	.	.	.	.
Template Conservation					.	.	.	.	.
Template Sequence		N	R	N	.	.	.	.	.	V	G	E	E	I	Y	E	D	V	T	F	Q	Q	K	V	L	Q	E	Y	K	K	M	I	E	E	G	D	I	H	W	Q	I	I	S
Template Known Secondary structure		T	T		.	.	.	.	.	B		S	S	T	T		B																	T		S	S
Template Predicted Secondary structure					.	.	.	.	.
Template SS confidence
		136	.	.						.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions