 |
Job Description | P0AEX5 | Confidence | 97.04% | Date | Thu Jan 5 11:24:32 GMT 2012 |
Rank | 205 | Aligned Residues | 84 |
% Identity | 13% | Template | c1xp8A_ |
PDB info |
PDB header:dna binding protein | Chain: A: PDB Molecule:reca protein; |
PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s"
|
Resolution | 2.50 Å |
|
 |
  |   |
7 | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | I | A | V | T | G | S | S | G | A | G | T | T | T | T | S | L | A | F | R | K | I | F | A | Q | L | N | L | H | A | A | E | V | E | G | D | S | F | H | R | Y | T | R | P | E | M | D | M | A | I | R | K | A | R | D | A | G | R | H | I | S | Y | F | G | P | E | A | N | D | F | G | L | L | E | Q | T | F | I | E | Y |
Query Conservation |   |
|
|
|
|
|
|   |
|
|
|
|
|
|
|   |
|   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |
|
|
|   |
|
|
|
|
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|   |
|   |
|   |
|
|
|   |   |
|
|   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |
|   |   |
|   |
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|
|
|   |
|   |   |   |   | . | . | . | . | . | . |   |   |   |   |   |   |
|
|   |
|   |   |   |
|   |   |   |   |   |   | . | . |   |   |
|   |   |
|   |   |   |   |   |   |
Template Sequence |   |
I | T | E | I | Y | G | P | E | S | G | G | K | T | T | L | A | L | A | I | V | A | Q | A | Q | K | A | G | G | T | C | A | F | I | D | A | E | H | A | L | D | . |
. |
. |
. |
. |
. |
P | V | Y | A | R | A | L | G | V | N | T | D | E | L | L | V | S | Q | P | D | . |
. |
N | G | E | Q | A | L | E | I | M | E | L | L |
Template Known Secondary structure |   |
 |  |  |  |  |  | S | T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  | S | S |
|
|
|
| . | . | . | . | . | . |  |  |  |  |  |  | T | T |
|
| G | G | G |
|  |  |  |
|
| S | . | . | S |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
| . | . |
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
73 | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | |
|
|
|
|
|
. | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | |
|
. | . | . | . | . | . | . | 140 | . | . | . | . |
  |
  |   |
87 | . | . | 90 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|  |  |
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | Q | S | G | K | G | K | S | R | K | Y | L |
Query Conservation |   |
|   |
|   |   |
|   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|
|
|
|
|
Template Sequence |   |
V | R | S | G | A | I | D | V | V | V | V | D |
Template Known Secondary structure |   |
 | T | T | T |
|
| S |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
145 | . | . | . | . | 150 | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|