Job Description P32053 Confidence 6.96% Date Thu Jan 5 11:49:00 GMT 2012 Rank 79 Aligned Residues 44 % Identity 16% Template c2v4xA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:capsid protein p27; PDBTitle: crystal structure of jaagsiekte sheep retrovirus capsid n-2 terminal domain Resolution 1.5 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.					.	320	.	.	.	.	.	.	.	.	.	330	.														.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	I	F	P	S	R	I	K	P	N	Q	P	M	N	S	.	.	.	.	Q	T	V	N	A	A	L	K	R	A	G	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	L	V	S	H	G	L	R	S	I	A	S	T	A	L
Query Conservation																	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	V	F	E	N	N	N	Q	R	Y	Y	E	S	L	P	F	K	Q	L	K	E	L	K	I	A	C	S	Q	Y	G	P	T	A	P	F	T	I	A	X	I	E	N	L	G	T	Q	A	L	P	P	N	D	W	K	Q	T	A	R	A	C	L
Template Known Secondary structure							S	S																						T		T	T	S												T	S															S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions