Job Description P32053 Confidence 96.90% Date Thu Jan 5 11:49:00 GMT 2012 Rank 32 Aligned Residues 154 % Identity 14% Template c2h7fX_ PDB info PDB header:isomerase/dna Chain: X: PDB Molecule:dna topoisomerase 1; PDBTitle: structure of variola topoisomerase covalently bound to dna Resolution 2.70 Å

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		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250												.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.																																		.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.																																		.
Query Sequence		S	T	R	C	L	F	M	W	Q	L	L	T	I	T	R	P	A	.	.	.	.	.	.	.	.	.	.	.	E	A	A	E	A	R	W	D	E	I	D	F	N	A	S	E	W	K	I	P	A	A	R	M	K	M	N	R	D	H	T	V	P	.	L	S	D	G	A	L	A	I	L	E	M	M	K	P	L	S	G	G
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.																																		.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.																																		.
Template Conservation
Template Sequence		Q	L	A	V	F	M	L	M	E	T	M	F	F	I	R	F	G	K	M	K	Y	L	K	E	N	E	T	V	G	L	L	T	L	K	N	K	H	I	E	I	S	P	D	K	I	V	I	K	F	V	G	K	D	K	V	S	H	E	F	V	V	H	K	S	N	R	L	Y	K	P	L	L	K	L	T	D	D	S	S	P
Template Known Secondary structure																															S	T	T		B	G	G	G					S	S									G	G	G									T	T	S	T	T										T	T		T
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.																				.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	F	I	F	P	S	R	I	K	P	N	Q	P	M	N	S	Q	T	V	N	A	A	L	K	R	A	G	L	G	G	V	L	V	S	H	G	L	R	S	I	A	S	T	A	L	N	E	E	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	D	V	I	E	A	A	L	A
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.																.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.																.	.	.	.
Template Sequence		E	E	F	L	F	.	.	.	.	.	.	.	N	K	L	S	E	R	K	V	Y	E	S	I	K	Q	F	.	.	.	.	G	I	R	I	K	D	L	R	T	Y	G	V	N	Y	T	F	L	Y	N	F	W	T	N	V	K	S	I	S	P	L	P	S	P	K	K	L	I	A	L	T	I	K	Q	T	A	E	V	V	G
Template Known Secondary structure		T	S	B	T	T	.	.	.	.	.	.	.	T	T											G	G	G	.	.	.	.	T																										S	S	S																				T
Template Predicted Secondary structure							.	.	.	.	.	.	.																.	.	.	.
Template SS confidence
		196	.	.	.	200								.	.	.	.	.	.	.	.	.	210	.	.	.	.	.					.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.														.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	V	D	K	N	E	V	R	R	A	Y	N	R	S	D	Y	L	E	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	R	P	M	M	Q	W	W	A	D	L	V	K	A	A	D	S	G
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.
Template Sequence		H	T	.	P	S	I	S	K	R	A	M	A	T	T	I	L	E	M	V	K	D	K	N	F	L	D	V	V	S	K	T	T	F	D	E	F	L	S	I	V	V	D	H	V	K	S	S	T	D	G
Template Known Secondary structure		S		.																T	T		T	T							T	S																	T	T
Template Predicted Secondary structure				.
Template SS confidence
		265	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions