Job Description P32053 Confidence 100.00% Date Thu Jan 5 11:49:00 GMT 2012 Rank 1 Aligned Residues 326 % Identity 16% Template c1z1bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of a lambda integrase dimer bound to a2 coc' core site Resolution 3.80 Å

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		29	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		D	G	L	.	.	T	L	L	I	K	S	S	G	S	K	L	W	Q	F	R	Y	Y	R	P	L	T	K	Q	R	T	K	Q	S	F	G	A	Y	P	A	V	S	L	S	D	A	R	K	L	R	A	E	S	K	V	L	L	A	K	D	I	D	P	Q	E	H	Q	K	E	Q	V	R	N	S	Q	E	A	K	T	N	T
Query Conservation					.	.
Alig confidence					.	.									.	.	.	.												.	.																																		.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.												.	.																																		.	.	.	.	.	.	.	.
Template Sequence		R	D	L	P	P	N	L	Y	I	R	N	N	G	.	.	.	.	Y	Y	C	Y	R	D	P	R	T	G	K	.	.	E	F	G	L	G	R	D	R	R	I	A	I	T	E	A	I	Q	A	N	I	E	L	F	S	G	H	K	H	K	P	L	T	A	.	.	.	.	.	.	.	.	R	I	N	S	D	N	S	V	T
Template Known Secondary structure						T	T					T	T	T	.	.	.	.							T	T	T			.	.						S																												.	.	.	.	.	.	.	.							S		B
Template Predicted Secondary structure															.	.	.	.												.	.																																		.	.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.					.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.									.	.	.	70	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		F	L	L	V	A	E	R	W	W	N	V	.	K	K	T	S	V	T	E	D	Y	A	D	D	I	W	R	S	L	E	R	D	I	F	P	A	I	G	D	I	S	I	T	E	I	K	A	H	T	L	V	K	A	V	Q	P	V	Q	A	R	G	A	L	E	T	V	R	R	L	C	Q	R	I	N	E	V	M	I	Y	A
Query Conservation													.
Alig confidence													.																			.
Template Conservation																																.
Template Sequence		L	H	S	W	L	D	R	Y	E	K	I	L	A	S	R	G	I	K	Q	K	T	L	I	N	Y	M	S	K	I	K	.	A	I	R	R	G	L	P	D	A	P	L	E	D	I	T	T	K	E	I	A	A	M	L	N	G	Y	I	D	E	G	K	A	A	S	A	K	L	I	R	S	T	L	S	D	A	F	R	E	A
Template Known Secondary structure															T	T	T															.						S		S		B	G	G	G																T	T
Template Predicted Secondary structure																																.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	N	T	G	L	I	D	A	V	P	S	V	N	I	G	K	A	F	E	K	P	Q	K	K	N	M	P	S	I	R	P	D	Q	L	P	Q	L	M	H	T	M	R	T	A	S	I	S	M	S	T	R	C	L	F	M	W	Q	L	L	T	I	T	R	P	A	E	A	A	E	A	R	W	D	E	I	D	F	N	A	S
Query Conservation
Alig confidence														.	.	.	.	.
Template Conservation														.	.	.	.	.
Template Sequence		I	A	E	G	H	I	T	T	N	H	V	A	.	.	.	.	.	A	T	R	A	A	K	S	K	V	R	R	S	R	L	T	A	D	E	Y	L	K	I	Y	Q	A	A	E	S	S	P	C	W	L	R	L	A	M	E	L	A	V	V	T	G	Q	R	V	G	D	L	C	E	M	K	W	S	D	I	V	D	G	Y	L
Template Known Secondary structure				T	T	S		S	S		T	T	T	.	.	.	.	.	T	S									B															T	T	S	S																						T	T		B	G	G	G			T	T
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.						.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.			.	.	320	.	.	.	.	.	.	.	.	.	330	.	.				.	.	.	.	.	.
Predicted Secondary structure																																		.	.																					.	.																.	.	.
Query SS confidence																																		.	.																					.	.																.	.	.
Query Sequence		E	W	K	I	P	A	A	R	M	K	M	N	R	D	H	T	V	P	L	S	D	G	A	L	A	I	L	E	M	M	K	P	.	.	L	S	G	G	R	E	F	I	F	P	S	R	I	K	P	N	Q	P	M	N	.	.	S	Q	T	V	N	A	A	L	K	R	A	G	L	G	G	.	.	.	V	L	V	S	H	G
Query Conservation																																		.	.																					.	.																.	.	.
Alig confidence																																		.	.																					.	.																.	.	.
Template Conservation
Template Sequence		Y	V	E	Q	S	K	T	G	V	K	I	A	I	P	T	A	L	H	I	D	A	L	G	I	S	M	K	E	T	L	D	K	C	K	E	I	L	G	G	E	T	I	I	A	S	T	R	R	E	P	L	S	S	G	T	V	S	R	Y	F	M	R	A	R	K	A	S	G	L	S	F	E	G	D	P	P	T	F	H	E
Template Known Secondary structure						T	T	T								T	T				T	T	T	T														T		S	S	B	S	S			T	T	S																				T				S	S	B				T	T
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	S	I	A	S	T	A	L	N	E	E	G	F	P	P	D	V	I	E	A	A	L	A	H	V	D	K	N	E	V	R	R	A	Y	N	R
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		L	R	S	.	L	S	A	R	L	Y	E	K	Q	I	S	D	K	F	A	Q	H	L	L	G	H	K	S	D	T	M	A	S	Q	R	D	D	R
Template Known Secondary structure					.										T										T		S	S					T					T
Template Predicted Secondary structure					.
Template SS confidence
		310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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