Job Description P32053 Confidence 80.87% Date Thu Jan 5 11:49:00 GMT 2012 Rank 40 Aligned Residues 107 % Identity 12% Template c1a31A_ PDB info PDB header:isomerase/dna Chain: A: PDB Molecule:protein (topoisomerase i); PDBTitle: human reconstituted dna topoisomerase i in covalent complex2 with a 22 base pair dna duplex Resolution 2.10 Å

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		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250													.	.	.	.	.	.	.	.	.	260	.	.								.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Query Sequence		S	T	R	C	L	F	M	W	Q	L	L	T	I	T	R	P	A	.	.	.	.	.	.	.	.	.	.	.	.	E	A	A	E	A	R	W	D	E	I	D	F	.	.	.	.	.	.	.	N	A	S	E	W	K	I	P	A	A	R	M	K	M	N	R	D	H	T	V	P	L	S	D	G	A	L	A	I	L	E	M
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	R	A	V	A	L	Y	F	I	D	K	L	A	L	R	A	G	N	E	K	E	E	G	E	T	A	D	T	V	G	C	C	S	L	R	V	E	H	I	N	L	H	P	E	L	D	G	Q	E	Y	V	V	E	F	D	F	L	G	K	D	S	I	R	Y	Y	N	K	V	P	V	E	K	R	V	F	K	N	L	Q	L
Template Known Secondary structure																							T	T	T	S						G	G	G		B	G	G	G								T	T												G	G	G
Template Predicted Secondary structure
Template SS confidence
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	P	L	S	G	G	R	E	F	I	F	P	S	R	I	K	P	N	Q	P	M	N	S	Q	T	V	N	A	A	L	K	R	A	G	L	G	G	V	L	V	S	H	G	L	R	S	I	A	S	T	A	L	N	E
Query Conservation
Alig confidence														.	.	.	.	.	.	.																	.	.
Template Conservation														.	.	.	.	.	.	.																	.	.
Template Sequence		F	M	E	N	K	Q	P	E	D	D	L	F	.	.	.	.	.	.	.	D	R	L	N	T	G	I	L	N	K	H	L	Q	D	L	M	.	.	E	G	L	T	A	K	V	F	R	T	Y	N	A	S	I	T	L	Q
Template Known Secondary structure		T	T	T	T			T	T	S	B	T	T	.	.	.	.	.	.	.	T	T														S	.	.	T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.																	.	.
Template SS confidence
		554	.	.	.	.	.	560	.	.	.	.	.								.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.			.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions