 |
Job Description | P77402 | Confidence | 57.57% | Date | Thu Jan 5 12:28:57 GMT 2012 |
Rank | 461 | Aligned Residues | 37 |
% Identity | 5% | Template | d1ku2a1 |
SCOP info | DNA/RNA-binding 3-helical bundle
| Sigma3 and sigma4 domains of RNA polymerase sigma factors
| Sigma3 domain
|
Resolution | 2.90 |
|
  |   |
180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | |
|
. | . | 210 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
| . | . |
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | L | I | K | D | I | L | F | Y | L | N | N | N | Y | R | E | K | I | T | L | E | Q | L | S | K | K | F | R | . |
. |
A | S | V | S | Y | I | C | H | E |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |   |   | . | . |   |
|   |   |   |
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|
|   |   |   |
|   |
|   |   |
|
|   |
|
|   |
|
|
|
|   |   |
|
|   |   |
|   |   |   |
|
|   |   |   |
Template Sequence |   |
N | K | L | S | R | T | A | R | Q | L | Q | Q | E | L | G | R | E | P | S | Y | E | E | I | A | E | A | M | G | P | G | W | D | A | K | R | V | E | E | T |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
|
|
|  |  |  |  |  |  |  |  |
| S | S |
|
|  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
284 | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|