Job Description P77402 Confidence 65.88% Date Thu Jan 5 12:28:57 GMT 2012 Rank 418 Aligned Residues 49 % Identity 16% Template c3ivpD_ PDB info PDB header:dna binding protein Chain: D: PDB Molecule:putative transposon-related dna-binding protein; PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630. Resolution 2.02 Å

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		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	I	K	D	I	L	F	Y	L	N	N	N	Y	R	E	K	I	T	L	E	Q	L	S	K	K	F	R	A	S	V	S	Y	I	C	H	E	F	T	K	E	Y	R	I	S	P	I	N	Y	V	I	Q	R	R	M
Query Conservation
Alig confidence											.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.
Template Sequence		L	A	I	K	E	A	R	K	K	.	.	.	.	.	.	Q	G	L	T	R	E	Q	V	G	A	X	I	E	I	D	P	R	Y	L	T	N	I	E	N	K	G	Q	H	P	S	L	Q	V	L	Y	D	L	V	S	L
Template Known Secondary structure											.	.	.	.	.	.	T	T											T	S											S
Template Predicted Secondary structure											.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.							.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions