Job Description P77402 Confidence 65.45% Date Thu Jan 5 12:28:57 GMT 2012 Rank 422 Aligned Residues 155 % Identity 15% Template c2oz6A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:virulence factor regulator; PDBTitle: crystal structure of virulence factor regulator from pseudomonas2 aeruginosa in complex with camp Resolution 2.80 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.					70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		R	F	T	I	D	S	S	L	Y	V	A	H	A	D	D	.	.	.	.	I	V	V	I	E	R	G	R	L	H	A	V	A	S	D	V	N	D	P	A	T	T	C	T	C	A	L	Y	G	F	Q	F	Q	G	A	E	E	N	Q	L	L	Q	P	H	S	C	P	V	I	A	A	G	Q	G	K	E	V	I	K	T	L
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.
Template Conservation
Template Sequence		R	R	R	Y	T	A	K	S	T	I	I	Y	A	G	D	R	C	E	T	L	F	F	I	I	K	G	S	V	T	I	L	I	E	D	D	D	G	R	E	M	I	I	G	Y	L	N	S	G	D	F	F	G	E	L	G	L	F	E	Q	E	R	S	A	W	V	R	A	K	V	E	C	E	V	A	E	I	S	Y	A	K
Template Known Secondary structure							T	T						T	T	S	B										S									T	T	S										T	T				S		T	T	T				B			S					S	S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.										.	.	.	.	.	.	200	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.
Query Sequence		F	N	E	L	S	V	I	L	P	Q	S	K	N	S	Q	T	S	S	L	W	D	A	F	A	Y	T	L	A	I	L	Y	Y	E	N	F	K	N	A	Y	R	S	E	Q	G	Y	I	K	K	D	V	L	I	K	D	I	L	F	Y	L	N	N	N	Y	.	.	.	.	.	.	.	.	.	R	E	K	I	T	L	E	Q
Query Conservation																																																																	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		F	R	E	L	S	Q	Q	D	S	E	I	L	Y	T	L	G	S	Q	M	A	D	R	L	R	K	T	T	R	K	V	G	D	L	A	.	.	.	.	.	.	.	.	.	.	F	L	D	V	T	G	R	V	A	R	T	L	L	D	L	C	Q	Q	P	D	A	M	T	H	P	D	G	M	Q	I	K	I	T	R	Q	E
Template Known Secondary structure																																				.	.	.	.	.	.	.	.	.	.																T	T	S	T	T					T	T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140											.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	K	K	F	R	A	S	V	S	Y	I	C	H	E	F	T	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	R	I	V	G	C	S	R	E	M	V	G	R	V	L	K	S
Template Known Secondary structure							T	S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions