Job Description P77402 Confidence 70.14% Date Thu Jan 5 12:28:57 GMT 2012 Rank 383 Aligned Residues 152 % Identity 9% Template c1ft9A_ PDB info PDB header:transcription Chain: A: PDB Molecule:carbon monoxide oxidation system transcription PDBTitle: structure of the reduced (feii) co-sensing protein from r.2 rubrum Resolution 2.60 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	S	S	L	Y	V	A	H	A	D	D	I	V	V	I	E	R	G	R	L	H	A	V	A	S	D	V	N	D	P	A	T	T	C	T	C	A	L	Y	G	F	Q	F	Q	G	A	E	E	N	Q	L	L	Q	P	H	S	C	P	V	I	A	A	G	Q	G	K	E	V	I	K	T	L	F	N	E	L	S	V	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	R	S	K	I	H	A	K	G	S	L	V	C	T	G	E	G	D	E	N	G	V	F	V	V	V	D	G	R	L	R	V	Y	L	V	G	E	E	R	E	I	S	L	F	Y	L	T	S	G	D	M	F	C	M	H	S	G	C	L	V	E	A	T	E	R	T	E	V	R	F	A	D	I	R	T	F	E	Q	K
Template Known Secondary structure		T								T	T						T	T												S									T	T										T	T					S		S	S						S	S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.												190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	Q	S	K	N	S	Q	T	S	S	L	W	D	A	F	A	Y	T	L	A	I	L	Y	Y	E	N	F	K	N	A	Y	R	S	E	Q	G	Y	I	K	K	D	V	L	I	K	D	I	L	F	Y	L	.	.	.	.	.	.	.	.	.	.	.	N	N	N	Y	R	E	K	I	T	L	E	Q	L	S	K	K	F	R
Query Conservation																																																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.	.
Template Sequence		L	Q	T	C	P	S	M	A	W	G	L	I	A	I	L	G	R	A	L	T	S	C	M	R	T	I	E	D	L	M	F	H	D	.	.	.	.	.	.	.	.	.	I	K	Q	R	I	A	G	F	F	I	D	H	A	N	T	T	G	R	Q	T	G	V	I	V	S	V	D	F	T	V	E	E	I	A	N	L	I	G
Template Known Secondary structure						G	G	G																								T			.	.	.	.	.	.	.	.	.												T		B				S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.										.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		208	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	V	S	Y	I	C	H	E	F	T	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	S	R	Q	T	T	S	T	A	L	N	S
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions