Return to main results Retrieve Phyre Job Id

Job DescriptionP23484
Confidence99.25%DateThu Jan 5 11:39:30 GMT 2012
Rank13Aligned Residues71
% Identity23%Templated1rp3a2
SCOP infoDNA/RNA-binding 3-helical bundle Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma4 domain
Resolution2.30

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   100.........110.........120.........130.........140.........150.........160.........170
Predicted Secondary structure 









Query SS confidence 






































































Query Sequence  SPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHCLLFRLE
Query Conservation                       
      
  
    
 
  


  



  

   
 

   

    
Alig confidence 






































































Template Conservation 
 
      
    
   
  
    
 
  
      
  


  
 

  

     

   

  
  
Template Sequence  NVEEEVIKRELTEKVKEAVSKLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERLREMLSN
Template Known Secondary structure 
TTS
TS


TTS

Template Predicted Secondary structure 










Template SS confidence 






































































   164.....170.........180.........190.........200.........210.........220.........230....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions