Job Description P23484 Confidence 99.71% Date Thu Jan 5 11:39:30 GMT 2012 Rank 4 Aligned Residues 117 % Identity 17% Template c3mzyA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a Resolution 2.50 Å

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		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		D	D	I	A	Q	D	T	F	L	R	V	M	V	S	E	T	L	S	T	I	R	.	.	D	P	R	S	F	L	C	T	I	A	K	R	V	M	V	D	L	F	R	R	N	A	L	E	K	A	Y	L	E	M	L	A	L	M	P	E	G	G	A	P	S	P	E	E	R	E	S	Q	L	E	T	L	Q	L	L	D	S
Query Conservation																							.	.
Alig confidence																							.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	D	L	V	Q	E	G	I	L	G	L	L	K	A	I	K	F	Y	D	E	T	K	S	S	F	S	S	F	A	F	L	C	I	R	R	E	X	I	S	A	I	R	K	A	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	K	E	E	A	Y	L	L	K	E	E	I	E	E	F	K	K
Template Known Secondary structure			T	T																	T	T	T	S																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90																		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	D	G	L	N	G	K	T	R	E	A	F	L	L	S	Q	L	D	G	L	T	Y	S	E	I	A	H	K	L	G	V	S	I	S	S	V	K	K	Y	V	A	K	A	V	E	H	C	L	L	F	R	L	E	Y	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	S	E	N	N	F	S	K	F	E	K	E	V	L	T	Y	L	I	R	G	Y	S	Y	R	E	I	A	T	I	L	S	K	N	L	K	S	I	D	N	T	I	Q	R	I	R	K	K	S	E	E	W	I	K	E	E	E
Template Known Secondary structure							S												T	T	T											T																									T
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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