Job Description P23484 Confidence 64.27% Date Thu Jan 5 11:39:30 GMT 2012 Rank 468 Aligned Residues 46 % Identity 15% Template c2vi6F_ PDB info PDB header:transcription Chain: F: PDB Molecule:homeobox protein nanog; PDBTitle: crystal structure of the nanog homeodomain Resolution 2.6 Å

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		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.						.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.
Query SS confidence																				.	.	.	.	.
Query Sequence		L	N	G	K	T	R	E	A	F	L	L	S	Q	L	D	G	L	T	.	.	.	.	.	Y	S	E	I	A	H	K	L	G	V	S	I	S	S	V	K	K	Y	V	A	K	A	V	E	H	C	L	L
Query Conservation																				.	.	.	.	.
Alig confidence																				.	.	.	.	.
Template Conservation
Template Sequence		F	S	Q	A	Q	L	C	A	L	K	D	R	F	Q	K	Q	K	Y	L	S	L	Q	Q	M	Q	E	L	S	S	I	L	N	L	S	Y	K	Q	V	K	T	W	F	Q	N	Q	R	M	K	C	K	R
Template Known Secondary structure																		S															T																T		G	G
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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