Job Description P23484 Confidence 99.86% Date Thu Jan 5 11:39:30 GMT 2012 Rank 3 Aligned Residues 164 % Identity 16% Template c1rp3G_ PDB info PDB header:transcription Chain: G: PDB Molecule:rna polymerase sigma factor sigma-28 (flia); PDBTitle: cocrystal structure of the flagellar sigma/anti-sigma2 complex, sigma-28/flgm Resolution 2.30 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.				.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																												.	.	.																											.	.	.
Query SS confidence																												.	.	.																											.	.	.
Query Sequence		T	A	S	L	T	F	E	S	L	Y	G	T	H	H	G	W	L	K	S	W	L	T	R	K	L	Q	.	.	.	S	A	F	D	A	D	D	I	A	Q	D	T	F	L	R	V	M	V	S	E	T	L	S	T	I	R	.	.	.	D	P	R	S	F	L	C	T	I	A	K	R	V	M	V	D	L	F	R	R	N	A
Query Conservation																												.	.	.																											.	.	.
Alig confidence																												.	.	.																											.	.	.
Template Conservation
Template Sequence		S	N	Q	I	E	R	E	E	L	I	L	K	Y	L	P	L	V	K	A	I	A	T	N	I	K	K	H	L	P	E	D	V	D	I	R	D	L	I	S	Y	G	V	I	G	L	I	K	A	V	D	N	L	S	T	E	N	P	K	R	A	E	A	Y	I	K	L	R	I	K	G	A	I	Y	D	Y	L	R	S	L	D
Template Known Secondary structure														T													T	T	S		T	T	S																			T																											T	S	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.																																																			.	.	100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	K	A	Y	L	E	M	L	A	L	M	P	E	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	S	P	E	E	R	E	S	Q	L	E	T	L
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	S	R	Q	V	R	E	K	E	R	R	I	K	E	V	V	E	K	L	K	E	K	L	G	R	E	P	T	D	E	E	V	A	K	E	L	G	I	S	T	E	E	L	F	K	T	L	D	K	I	N	F	S	Y	I	L	S	L	E	E	V	F	R	D	F	A	R	D	Y	S	E	E	V	I	K	R	E	L	T
Template Known Secondary structure		T	T																							S	S												T	S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	L	D	S	M	L	D	G	L	N	G	K	T	R	E	A	F	L	L	S	Q	L	D	G	L	T	Y	S	E	I	A	H	K	L	G	V	S	I	S	S	V	K	K	Y	V	A	K	A	V	E	H	C	L	L	F	R	L	E	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	V	K	E	A	V	S	K	L	P	E	R	E	K	L	V	I	Q	L	I	F	Y	E	E	L	P	A	K	E	V	A	K	I	L	E	T	S	V	S	R	V	S	Q	L	K	A	K	A	L	E	R	L	R	E	M	L	S	N	P
Template Known Secondary structure										T	S													T	S												T	S																						S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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