Job Description P23484 Confidence 99.94% Date Thu Jan 5 11:39:30 GMT 2012 Rank 1 Aligned Residues 167 % Identity 19% Template c1or7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma-e factor; PDBTitle: crystal structure of escherichia coli sigmae with the cytoplasmic2 domain of its anti-sigma rsea Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		M	S	D	R	A	T	T	T	A	S	L	T	F	E	S	L	Y	G	T	H	H	G	W	L	K	S	W	L	T	R	K	L	Q	S	A	F	D	A	D	D	I	A	Q	D	T	F	L	R	V	M	V	S	E	T	L	S	T	I	R	.	D	P	R	S	F	L	C	T	I	A	K	R	V	M	V	D	L	F	R	R
Query Conservation																																																													.
Alig confidence																																	.																												.
Template Conservation																																	.
Template Sequence		L	V	E	R	V	Q	K	G	D	Q	K	A	F	N	L	L	V	V	R	Y	Q	H	K	V	A	S	L	V	S	R	Y	.	V	P	S	G	D	V	P	D	V	V	Q	E	A	F	I	K	A	Y	R	A	L	D	S	F	R	G	D	S	A	F	Y	T	W	L	Y	R	I	A	V	N	T	A	K	N	Y	L	V	A
Template Known Secondary structure								T	T																					T	T	T	.	S		G	G	G																G	G	G			S	S	S
Template Predicted Secondary structure																																	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	L	E	K	A	Y	L	E	M	L	A	L	M	P	E	G	G	A	P	S	P	E	E	R	E	S	Q	L	E	T	L	Q	L	L	D	S	M	L	D	G	L	N	G	K	T	R	E	A	F	L	L	S	Q	L	D	G	L	T	Y	S	E	I	A	H	K	L	G	V	S	I	S	S	V	K	K	Y	V	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	G	R	R	P	P	S	S	D	V	D	A	I	E	A	E	N	F	E	S	G	G	A	N	L	M	L	S	E	E	L	R	Q	I	V	F	R	T	I	E	S	L	P	E	D	L	R	M	A	I	T	L	R	E	L	D	G	L	S	Y	E	E	I	A	A	I	M	D	C	P	V	G	T	V	R	S	R	I	F	R
Template Known Secondary structure			T	T			T											S			S	S																					S													T	T											T	T	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	E	H	C	L	L	F	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	E	A	I	D	N	K	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions