Job Description P23484 Confidence 98.32% Date Thu Jan 5 11:39:30 GMT 2012 Rank 26 Aligned Residues 131 % Identity 15% Template c1ku2A_ PDB info PDB header:transcription Chain: A: PDB Molecule:sigma factor siga; PDBTitle: crystal structure of thermus aquaticus rna polymerase sigma2 subunit fragment containing regions 1.2 to 3.1 Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.
Query SS confidence																																																												.	.	.
Query Sequence		S	D	R	A	T	T	T	A	S	L	T	F	E	S	L	Y	G	T	H	H	G	W	L	K	S	W	L	T	R	K	L	Q	S	A	F	D	A	D	D	I	A	Q	D	T	F	L	R	V	M	V	S	E	T	L	S	T	I	R	.	.	.	D	P	R	S	F	L	C	T	I	A	K	R	V	M	V	D	L	F	R
Query Conservation																																																												.	.	.
Alig confidence																																																												.	.	.
Template Conservation
Template Sequence		Y	L	H	I	A	R	E	G	E	A	A	R	Q	H	L	I	E	A	N	L	R	L	V	V	S	I	A	K	K	Y	T	G	R	G	L	S	F	L	D	L	I	Q	E	G	N	Q	G	L	I	R	A	V	E	K	F	E	Y	K	R	R	F	K	F	S	T	Y	A	T	W	W	I	R	Q	A	I	N	R	A	I	A
Template Known Secondary structure																			T	T										T	T		S	S	S	S																						G	G	G		S																			T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.
Query SS confidence																																																																							.	.
Query Sequence		R	N	A	L	E	K	A	Y	L	E	M	L	A	L	M	P	E	G	G	A	P	S	P	E	E	R	E	S	Q	L	E	T	L	Q	L	L	D	S	M	L	D	G	L	N	G	K	T	R	E	A	F	L	L	S	Q	L	D	G	L	T	Y	S	E	I	A	H	K	L	G	.	.	V	S	I	S	S	V	K	K	Y
Query Conservation																																																																							.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.																.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template Sequence		D	Q	A	R	T	I	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	V	H	M	V	E	T	I	N	K	L	S	R	T	A	R	Q	L	Q	Q	E	.	.	.	.	.	.	.	.	L	G	R	E	P	S	Y	E	E	I	A	E	A	M	G	P	G	W	D	A	K	R	V	E	E	T
Template Known Secondary structure		T	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.		T	S													S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.
Template SS confidence
		268	.	270	.	.	.	.																		.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.									.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		157
Predicted Secondary structure
Query SS confidence
Query Sequence		V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L
Template Known Secondary structure		G
Template Predicted Secondary structure
Template SS confidence
		323

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions