Job Description P0CF71 Confidence 43.41% Date Thu Jan 5 11:31:34 GMT 2012 Rank 495 Aligned Residues 43 % Identity 9% Template c1l9uH_ PDB info PDB header:transcription Chain: H: PDB Molecule:sigma factor siga; PDBTitle: thermus aquaticus rna polymerase holoenzyme at 4 a2 resolution Resolution 4.00 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	G	V	T	A	A	A	R	E	L	S	L	Y	E	S	Q	L	Y	N	W	R	S	K	Q	Q	N	Q	Q	T	S	S	E	R	E	L	E	M	S	T	E	I	A	R	L	K	R	Q	L	A	E	R	D	E	E	L	A	I	L
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	H	T	L	E	E	V	G	A	Y	F	G	V	T	R	E	R	I	R	Q	I	E	N	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	K	L	K	Y	H	E	S	R	T	R	K	L	R	D	F	L
Template Known Secondary structure										T	T	S		S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											S			G	G	G	T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.																	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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