Job Description P0CF71 Confidence 55.73% Date Thu Jan 5 11:31:34 GMT 2012 Rank 438 Aligned Residues 48 % Identity 25% Template c1ic8B_ PDB info PDB header:transcription/dna Chain: B: PDB Molecule:hepatocyte nuclear factor 1-alpha; PDBTitle: hepatocyte nuclear factor 1a bound to dna : mody3 gene2 product Resolution 2.60 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.							.	.	.	.	.	.	.	.	40																						.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	K	T	V	S	T	S	K	K	P	R	K	Q	H	S	P	E	F	R	S	E	A	L	K	L	A	E	R	I	G	.	.	.	.	.	.	V	T	A	A	A	R	E	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	E	S	Q	L	Y	N	W
Query Conservation																																.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	V	A	Q	Q	F	T	H	R	N	R	F	K	W	G	P	A	S	Q	Q	I	L	F	Q	A	Y	E	R	Q	K	N	P	S	K	E	E	R	E	T	L	V	E	E	C	N	R	A	E	C	I	Q	R	G	V	S	P	S	Q	A	Q	G	L	G	S	N	L	V	T	E	V	R	V	Y	N	W
Template Known Secondary structure		T	T	T	T	T	T																						S																								T	S				T	T			T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions