Job Description P0A9K1 Confidence 98.97% Date Wed Jan 25 15:20:20 GMT 2012 Rank 15 Aligned Residues 122 % Identity 23% Template c3l9oA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome Resolution 3.39 Å

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		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.												210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	N	E	A	Q	L	H	Y	L	K	A	I	E	S	K	Q	L	I	F	A	T	G	E	A	G	C	G	K	T	W	I	S	A	A	K	A	A	E	A	L	I	H	K	D	V	D	R	I	I	V	T	R	P	V	L	Q	A	D	.	.	.	.	.	.	.	.	.	.	.	E	D	L	G	F	L	P	G	D	I
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.
Template Sequence		T	L	D	P	F	Q	D	T	A	I	S	C	I	D	R	G	E	S	V	L	V	S	A	H	T	S	A	G	K	T	V	V	A	E	Y	A	I	A	Q	S	L	K	N	K	.	.	Q	R	V	I	Y	T	S	P	I	K	A	L	S	N	Q	K	Y	R	E	L	L	A	E	F	G	D	V	G	L	M	T	G	D	I
Template Known Secondary structure															T	T	T									S	S	S																T	T	.	.								S	S															T	S	S						S	S
Template Predicted Secondary structure																																														.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.			.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.						.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.					.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.						.	.															.	.	.	.
Query SS confidence																																													.	.	.	.	.						.	.															.	.	.	.
Query Sequence		A	E	K	F	A	P	Y	F	R	P	V	Y	D	V	L	V	R	R	L	G	A	S	F	M	Q	Y	C	L	R	P	E	I	G	K	V	E	I	A	P	F	A	Y	M	.	.	.	.	.	R	G	R	T	F	.	.	E	N	A	V	V	I	L	D	E	A	Q	N	V	T	.	.	.	.	A	A	Q	M	K	M	F
Query Conservation																																													.	.	.	.	.						.	.															.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.						.	.															.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	I	N	P	D	A	G	C	L	V	M	T	T	E	I	L	R	S	M	L	Y	R	G	S	E	V	M	R	E	V	A	W	V	I	F	D	E	V	H	Y	M	R	D	K	E	R	G	V	V	W	E	E	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B				S		S																	S	S												T	G	G	G	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																													227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	R	L	G	E	N	V	T	V	I	V	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	I	L	L	P	D	K	V	R	Y	V	F	L
Template Known Secondary structure					S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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