Job Description P0A9K1 Confidence 97.78% Date Wed Jan 25 15:20:20 GMT 2012 Rank 89 Aligned Residues 166 % Identity 14% Template c3fmoB_ PDB info PDB header:oncoprotein/hydrolase Chain: B: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: crystal structure of the nucleoporin nup214 in complex with the dead-2 box helicase ddx19 Resolution 2.51 Å

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		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		R	S	H	K	Q	R	E	E	E	S	V	T	S	L	V	Q	M	G	G	V	E	A	I	G	M	A	R	D	S	R	D	T	S	P	I	L	A	R	N	E	A	Q	L	H	Y	L	K	A	I	E	S	.	.	K	Q	L	I	F	A	T	G	E	A	G	C	G	K	T	W	I	S	A	A	K	A	A	E	A	L	I
Query Conservation																																																					.	.
Alig confidence																									.	.									.																		.	.
Template Conservation																									.	.									.
Template Sequence		Q	R	D	P	N	S	P	L	Y	S	V	K	S	F	E	E	L	R	L	K	P	Q	L	.	.	L	Q	G	V	Y	A	M	G	.	F	N	R	P	S	K	I	Q	E	N	A	L	P	L	M	L	A	E	P	P	Q	N	L	I	A	Q	S	Q	S	G	T	G	K	T	A	A	F	V	L	A	M	L	S	Q	V	E
Template Known Secondary structure			S	S	T	T									S	G	G	G	T						.	.							T	T	.			S													T	S	S	S										T	T	S	S
Template Predicted Secondary structure																									.	.									.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		193	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.													.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure					.																																											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.																																											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	K	D	.	V	D	R	I	I	V	T	R	P	V	L	Q	A	D	E	D	L	G	F	L	P	G	D	I	A	E	K	F	A	P	Y	F	R	P	V	Y	D	V	L	V	R	R	.	.	.	.	.	.	.	.	.	.	.	.	L	G	A	S	F	M	Q	Y	C	L	R	P	E	I	G	K	V	E	I	A	P	F
Query Conservation					.																																											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	A	N	K	Y	P	Q	C	L	C	L	S	P	T	Y	E	L	A	L	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	V	I	E	Q	M	G	K	F	Y	P	E	L	K	L	A	Y	A	V	R	G	N	K	L	E	R	G	Q	K	I	S	E	Q	I	V	I	G	T	P	G
Template Known Secondary structure		T	T	S		S								S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	T	S	T	T							S	T	T					T	T						S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.																			.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		260					.	.	.	.	.	.	.	.	.				270	.	.	.	.	.	.	.	.	.	280	.	.						.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure			.	.	.	.										.	.	.														.	.	.	.	.
Query SS confidence			.	.	.	.										.	.	.														.	.	.	.	.
Query Sequence		A	.	.	.	.	Y	M	R	G	R	T	F	E	N	.	.	.	A	V	V	I	L	D	E	A	Q	N	V	T	A	.	.	.	.	.	A	Q	M	K	M	F	L	T	R	L	G	E	N	V	T	V	I	V	N
Query Conservation			.	.	.	.										.	.	.														.	.	.	.	.
Alig confidence			.	.	.	.										.	.	.														.	.	.	.	.
Template Conservation
Template Sequence		T	V	L	D	W	C	S	K	L	K	F	I	D	P	K	K	I	K	V	F	V	L	D	E	A	D	V	M	I	A	T	Q	G	H	Q	D	Q	S	I	R	I	Q	R	M	L	P	R	N	C	Q	M	L	L	F
Template Known Secondary structure								T	T	T					G	G	G		S					T	T							S	T	T										T	T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions