Job Description P0A9K1 Confidence 98.26% Date Wed Jan 25 15:20:20 GMT 2012 Rank 42 Aligned Residues 175 % Identity 14% Template c3fe2B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx5; PDBTitle: human dead-box rna helicase ddx5 (p68), conserved domain i in complex2 with adp Resolution 2.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	K	Q	R	E	E	E	S	V	T	S	L	V	Q	M	G	G	V	E	A	I	G	M	A	R	D	S	R	D	T	S	P	I	L	A	R	N	E	A	Q	L	H	Y	L	K	A	I	E	S	K	Q	L	I	F	A	T	G	E	A	G	C	G	K	T	W	I	S	A	A	K	A	A	E	A	L	I	H	K	D	V
Query Conservation
Alig confidence																							.	.									.
Template Conservation																							.	.									.
Template Sequence		R	G	H	N	C	P	K	P	V	L	N	F	Y	E	A	N	F	P	A	N	V	.	.	M	D	V	I	A	R	Q	N	.	F	T	E	P	T	A	I	Q	A	Q	G	W	P	V	A	L	S	G	L	D	M	V	G	V	A	Q	T	G	S	G	K	T	L	S	Y	L	L	P	A	I	V	H	I	N	H	Q	P	F
Template Known Secondary structure			S	T	T						S	S					T						.	.							T	T	.			S														T	T									T	T	S																T	S
Template Predicted Secondary structure																							.	.									.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.			.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		197							.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260									.	.
Predicted Secondary structure			.	.	.	.	.	.																																																																.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.																																																																.	.	.	.	.	.	.	.
Query Sequence		D	.	.	.	.	.	.	R	I	I	V	T	R	P	V	L	Q	A	D	E	D	L	G	F	L	P	G	D	I	A	E	K	F	A	P	Y	F	R	P	V	Y	D	V	L	V	R	R	L	G	A	S	F	M	Q	Y	C	L	R	P	E	I	G	K	V	E	I	A	P	F	A	.	.	.	.	.	.	.	.	Y	M
Query Conservation			.	.	.	.	.	.																																																																.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.																.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.
Template Sequence		L	E	R	G	D	G	P	I	C	L	V	L	A	P	T	R	E	L	A	Q	Q	V	.	.	.	.	.	.	.	Q	Q	V	A	A	E	Y	C	R	A	C	R	L	K	S	T	C	I	Y	G	G	A	P	K	G	P	Q	I	R	D	L	E	R	G	V	E	I	C	I	A	T	P	G	R	L	I	D	F	L	E	C
Template Known Secondary structure				T	T				S						S	S								.	.	.	.	.	.	.											T	T								T	T	S											S			S															T
Template Predicted Secondary structure																								.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.								.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		263	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.					.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure									.													.	.	.	.
Query SS confidence									.													.	.	.	.
Query Sequence		R	G	R	T	F	E	N	.	A	V	V	I	L	D	E	A	Q	N	V	T	.	.	.	.	A	A	Q	M	K	M	F	L	T	R	L	G	E	N	V	T	V	I	V	N
Query Conservation									.													.	.	.	.
Alig confidence									.													.	.	.	.
Template Conservation
Template Sequence		G	K	T	N	L	R	R	T	T	Y	L	V	L	D	E	A	D	R	M	L	D	M	G	F	E	P	Q	I	R	K	I	V	D	Q	I	R	P	D	R	Q	T	L	M	W
Template Known Secondary structure		T	S				T	T							T	T							T	T											T	S		T	T
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions