Job Description P0A9K1 Confidence 97.69% Date Wed Jan 25 15:20:20 GMT 2012 Rank 97 Aligned Residues 141 % Identity 17% Template c3dmqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:rna polymerase-associated protein rapa; PDBTitle: crystal structure of rapa, a swi2/snf2 protein that2 recycles rna polymerase during transcription Resolution 3.20 Å

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		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.			.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		E	A	Q	L	H	Y	L	K	A	I	E	S	K	Q	L	.	.	I	F	A	T	G	E	A	G	C	G	K	T	W	I	S	A	A	K	A	A	E	A	L	I	H	K	D	V	D	R	I	I	V	T	R	P	V	L	Q	A	D	E	D	L	G	F	L	P	G	D	I	A	E	K	F	A	P	Y	F	R	P	V	Y
Query Conservation																	.	.
Alig confidence																	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	H	Q	L	N	I	A	H	D	V	G	R	R	H	A	P	R	V	L	L	A	D	E	V	G	L	G	K	T	I	E	A	G	X	I	L	H	Q	Q	L	L	S	G	A	A	E	R	V	L	I	I	V	P	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	Q	H	Q	W	L	V	E	X	L
Template Known Secondary structure														S	S	S									T	T	S																T	S	S										T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.																210	.	.	.	.	.	.	.	.	.	220
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.									.	.	.	.	.	.	.	260	.	.	.	.	.									.	.	.	.	270	.	.	.	.	.	.	.	.	.	280						.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																							.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.																.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.																.	.	.	.	.
Query Sequence		D	V	L	V	R	R	L	G	A	S	F	M	Q	Y	C	L	R	P	E	I	G	.	.	.	.	.	.	.	.	K	V	E	I	A	P	F	A	Y	M	R	G	R	.	.	.	.	.	.	.	.	T	F	E	N	A	V	V	I	L	D	E	A	Q	N	V	.	.	.	.	.	T	A	A	Q	M	K	M	F	L	T
Query Conservation																							.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.																.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.																.	.	.	.	.
Template Conservation
Template Sequence		R	R	F	N	L	R	F	A	L	F	D	D	E	R	Y	A	E	A	Q	H	D	A	Y	N	P	F	D	T	E	Q	L	V	I	C	S	L	D	F	A	R	R	S	K	Q	R	L	E	H	L	C	E	A	E	W	D	L	L	V	V	D	E	A	H	H	L	V	W	S	E	D	A	P	S	R	E	Y	Q	A	I	E
Template Known Secondary structure				S																		T	T		S	S	S	T	T		S											T	S	T	T	T	T					T	S										S	S					B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		291	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		R	L	G	E	N	V	.	.	T	V	I	V	N	G	D	I	T	Q	C	D	L
Query Conservation								.	.
Alig confidence								.	.
Template Conservation
Template Sequence		Q	L	A	E	H	V	P	G	V	L	L	L	T	A	T	P	E	Q	L	G	X
Template Known Secondary structure					T	T		S	S				S		S	S		S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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