Job Description P0A9K1 Confidence 98.13% Date Wed Jan 25 15:20:20 GMT 2012 Rank 57 Aligned Residues 166 % Identity 13% Template c3dkpA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx52; PDBTitle: human dead-box rna-helicase ddx52, conserved domain i in complex with2 adp Resolution 2.10 Å

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		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence		H	K	Q	R	E	E	E	S	V	T	S	L	V	Q	M	G	.	.	.	G	V	E	A	I	G	M	A	R	D	S	R	D	T	S	P	I	L	A	R	N	E	A	Q	L	H	Y	L	K	A	I	E	S	K	Q	L	I	F	A	T	G	E	A	G	C	G	K	T	W	I	S	A	A	K	A	A	E	A	L	I	H
Query Conservation																		.	.	.
Alig confidence																		.	.	.						.	.
Template Conservation																										.	.
Template Sequence		Q	G	T	D	L	P	D	P	I	A	T	F	Q	Q	L	D	Q	E	Y	K	I	N	S	R	.	.	L	L	Q	N	I	L	D	A	G	F	Q	M	P	T	P	I	Q	M	Q	A	I	P	V	M	L	H	G	R	E	L	L	A	S	A	P	T	G	S	G	K	T	L	A	F	S	I	P	I	L	M	Q	L	K	Q
Template Known Secondary structure			S	S	S						S	S														.	.								T	T			S														T	T									T	T	S																S
Template Predicted Secondary structure																										.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		194	.	.	.			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240																.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure						.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	D	V	D	.	.	R	I	I	V	T	R	P	V	L	Q	A	D	E	D	L	G	F	L	P	G	D	I	A	E	K	F	A	P	Y	F	R	P	V	Y	D	V	L	V	R	R	L	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	F	M	Q	Y	C	L	R	P	E	I	G	K	V	E	I
Query Conservation						.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	A	N	K	G	F	R	A	L	I	I	S	P	T	R	E	L	A	S	Q	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	R	E	L	I	K	I	S	E	G	T	G	F	R	I	H	M	I	H	K	A	A	V	A	A	K	K	F	G	P	K	S	S	K	K	F	D	I	L	V	T
Template Known Secondary structure				S	S	S								S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	T	S															T	T	T	S	T	T	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250																			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		257	.	.	260	.	.	.									.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.						.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.																				.	.	.	.	.											.
Query SS confidence									.	.	.	.	.	.	.	.																				.	.	.	.	.											.
Query Sequence		A	P	F	A	Y	M	R	.	.	.	.	.	.	.	.	G	R	T	F	E	N	A	V	V	I	L	D	E	A	Q	N	V	T	A	.	.	.	.	.	A	Q	M	K	M	F	L	T	R	L	.	G	E	N	V	T	V	I	V	N	G
Query Conservation									.	.	.	.	.	.	.	.																				.	.	.	.	.											.
Alig confidence									.	.	.	.	.	.	.	.																				.	.	.	.	.											.
Template Conservation
Template Sequence		T	P	N	R	L	I	Y	L	L	K	Q	D	P	P	G	I	D	L	A	S	V	E	W	L	V	V	D	E	S	D	K	L	F	E	D	G	G	F	R	D	Q	L	A	S	I	F	L	A	C	T	S	H	K	V	R	R	A	M	F	S
Template Known Secondary structure												S	S	S		S				T	T							S	S																								T	T
Template Predicted Secondary structure
Template SS confidence
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions