Job Description P0A9K1 Confidence 98.22% Date Wed Jan 25 15:20:20 GMT 2012 Rank 47 Aligned Residues 169 % Identity 14% Template c2kbeA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dbp5; PDBTitle: solution structure of amino-terminal domain of dbp5p Resolution UNK

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		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.			.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		D	S	R	S	H	K	Q	R	E	E	E	S	V	T	S	L	V	Q	M	G	G	V	E	A	I	G	M	A	R	D	S	R	D	T	S	P	I	L	A	R	N	E	A	Q	L	H	Y	L	K	A	I	.	.	E	S	K	Q	L	I	F	A	T	G	E	A	G	C	G	K	T	W	I	S	A	A	K	A	A	E	A
Query Conservation																																																					.	.
Alig confidence																											.	.									.																.	.
Template Conservation																											.	.									.
Template Sequence		D	I	Q	A	D	P	N	S	P	L	Y	S	A	K	S	F	D	E	L	G	L	A	P	E	L	.	.	L	K	G	I	Y	A	M	K	.	F	Q	K	P	S	K	I	Q	E	R	A	L	P	L	L	L	H	N	P	P	R	N	M	I	A	Q	S	Q	S	G	T	G	K	T	A	A	F	S	L	T	M	L	T	R
Template Known Secondary structure		S	S	T	T	G	G	G								S					S	S					.	.							S	S	.	S	S				S									S	S			S	S							S	S	T	T
Template Predicted Secondary structure																											.	.									.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		191	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.											.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.																																											.	.	.	.	.	.	.	.	.	.
Query SS confidence							.																																											.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	H	K	D	.	V	D	R	I	I	V	T	R	P	V	L	Q	A	D	E	D	L	G	F	L	P	G	D	I	A	E	K	F	A	P	Y	F	R	P	V	Y	D	V	L	V	R	R	.	.	.	.	.	.	.	.	.	.	L	G	A	S	F	M	Q	Y	C	L	R	P	E	I	G	K	V	E	I	A	P	F
Query Conservation							.																																											.	.	.	.	.	.	.	.	.	.
Alig confidence							.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	N	P	E	D	A	S	P	Q	A	I	C	L	A	P	S	R	E	L	A	R	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	V	V	Q	E	M	G	K	F	T	K	I	T	S	Q	L	I	V	P	D	S	F	E	K	N	K	Q	I	N	A	Q	V	I	V	G	T	P	G
Template Known Secondary structure					T	T										S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	T	T		S							S	T	T		S			S	S					S						T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.																			.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		260							.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.						.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure			.	.	.	.	.	.																		.	.	.	.	.
Query SS confidence			.	.	.	.	.	.																		.	.	.	.	.
Query Sequence		A	.	.	.	.	.	.	Y	M	R	G	R	T	F	E	N	A	V	V	I	L	D	E	A	.	.	.	.	.	Q	N	V	T	A	A	Q	M	K	M	F	L	T	R	L	G	E	N	V	T	V	I	V	N	G
Query Conservation			.	.	.	.	.	.																		.	.	.	.	.
Alig confidence			.	.	.	.	.	.																		.	.	.	.	.
Template Conservation
Template Sequence		T	V	L	D	L	M	R	R	K	L	M	Q	L	Q	K	I	K	I	F	V	L	D	E	A	D	N	M	L	D	Q	Q	G	L	G	D	Q	C	I	R	V	K	R	F	L	P	K	D	T	Q	L	V	L	F	S
Template Known Secondary structure		T							T	T	S			T	T	S															S	T	T												T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions