Job Description P0A9K1 Confidence 96.23% Date Wed Jan 25 15:20:20 GMT 2012 Rank 228 Aligned Residues 164 % Identity 11% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	K	Q	L	I	F	A	T	G	E	A	G	C	G	K	T	W	I	S	A	A	K	A	A	E	A	L	I	H	K	D	V	D	R	I	I	V	T	R	P	V	L	Q	A	D	E	D	L	G	F	L	P	G	D	I	A	E	K	F	A	P	Y	F	R	P	V	Y	D	V	L	V	R	R	L	G	A	S	F	M
Query Conservation
Alig confidence																																	.											.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.
Template Conservation																																	.											.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.
Template Sequence		T	K	G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	.	W	K	T	C	L	I	C	A	D	T	.	.	.	.	.	.	.	.	F	R	A	G	A	F	D	Q	.	.	.	.	.	.	.	.	.	L	K	Q	N	A	T	K	A	R	I	P	F	Y
Template Known Secondary structure			S	S								S	T	T	S	S															T	T	.											.	.	.	.	.	.	.	.	S	S	S						.	.	.	.	.	.	.	.	.									T
Template Predicted Secondary structure																																	.											.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.		.	.	130	.	.	.	.	.	.	.									.	.	140	.	.	.	.	.										.	.	.	.	150	.	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.			.	280	.	.	.	.	.	.	.	.			.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.											.	.
Query SS confidence																																					.	.											.	.
Query Sequence		Q	Y	C	L	R	P	E	I	G	K	V	E	I	A	P	F	A	Y	M	R	G	R	T	F	E	N	A	V	V	I	L	D	E	A	Q	.	.	N	V	T	A	A	Q	M	K	M	F	.	.	L	T	R	L	G	E	N	V	T	V	I	V	N	G	D	I	T	Q	C	D	L	P	R	G	V	C	S	G	L	S	D
Query Conservation																																					.	.											.	.
Alig confidence																											.	.									.	.											.	.																			.	.	.	.	.			.
Template Conservation																											.	.																																									.	.	.	.	.			.
Template Sequence		G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G	V	E	K	F	K	N	E	N	F	E	.	.	I	I	I	V	D	T	S	G	R	H	K	Q	E	D	S	L	F	E	E	M	L	Q	V	A	N	A	I	Q	P	D	N	I	V	Y	V	M	D	A	S	I	.	.	.	.	.	G	Q	.	A	C	E	A	Q
Template Known Secondary structure							S																T	T			.	.											T	T																		S								T	T		.	.	.	.	.		T	.	T
Template Predicted Secondary structure																											.	.																																									.	.	.	.	.			.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.						.	.		.	.	230	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	E	R	F	E	E	D	E	M	V	G	I	V	R	F	G	K	E	D	C	V	R	S	A	L	C	Q	R	T	L	H	A	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	A	F	K	D	K	V	D	V	A	S	V	I	V	T	K	L	D	G	H	A	K	G	G	G	A	L	S	A	V	A	A	T
Template Known Secondary structure																			T	T	S					T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions