Job Description P0A9K1 Confidence 96.22% Date Wed Jan 25 15:20:20 GMT 2012 Rank 229 Aligned Residues 165 % Identity 16% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	K	Q	L	I	F	A	T	G	E	A	G	C	G	K	T	W	I	S	A	A	K	A	A	E	A	L	I	H	K	D	V	D	R	I	I	V	T	R	P	V	L	Q	A	D	E	D	L	G	F	L	P	G	D	I	A	E	K	F	A	P	Y	F	R	P	V	Y	D	V	L	V	R	R	L	G	A	S	F	M
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.
Template Sequence		Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	K	V	L	V	V	S	A	D	V	.	.	.	.	.	.	.	.	Y	R	P	A	A	I	K	Q	.	.	.	.	.	.	.	.	.	L	E	T	L	A	E	Q	V	G	V	D	F	F
Template Known Secondary structure		S	S	S								S	S	S	S	S	S	T	T	T										T	S	S	S					B						.	.	.	.	.	.	.	.	S	S	S		S				.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.									140	.	.	.	.	.	.	.										.	.	150	.	.	.	.	.	.	.	.	.	160
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.			.	280	.	.	.	.	.	.	.	.			.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.											.	.
Query SS confidence																																					.	.											.	.
Query Sequence		Q	Y	C	L	R	P	E	I	G	K	V	E	I	A	P	F	A	Y	M	R	G	R	T	F	E	N	A	V	V	I	L	D	E	A	Q	.	.	N	V	T	A	A	Q	M	K	M	F	.	.	L	T	R	L	G	E	N	V	T	V	I	V	N	G	D	I	T	Q	C	D	L	P	R	G	V	C	S	G	L	S	D
Query Conservation																																					.	.											.	.
Alig confidence																											.	.									.	.											.	.																					.	.	.	.	.	.
Template Conservation																											.	.																																											.	.	.	.	.	.
Template Sequence		P	S	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	.	.	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V	V	D	A	M	T	G	Q	.	.	.	.	.	.	D	A	A	N	T
Template Known Secondary structure				S	S				T	T													T	T		S	.	.											S	S																		S								T	T	T	G	G	.	.	.	.	.	.	G	G
Template Predicted Secondary structure																											.	.																																											.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.							.	.	230	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	E	R	F	E	E	D	E	M	V	G	I	V	R	F	G	K	E	D	C	V	R	S	A	L	C	Q	R	T	L	H	A	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	A	F	N	E	A	L	P	L	T	G	V	V	L	T	K	V	D	G	D	A	R	G	G	A	A	L	S	I	R	H	I	T
Template Known Secondary structure							T	T		S	S								S	S	S		S			T								T	T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions