Job Description P0A9K1 Confidence 99.45% Date Wed Jan 25 15:20:20 GMT 2012 Rank 8 Aligned Residues 152 % Identity 20% Template c2gk7A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: structural and functional insights into the human upf1 helicase core Resolution 2.80 Å

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		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	S	P	I	L	A	R	N	E	A	Q	L	H	Y	L	K	A	I	E	S	K	Q	L	I	F	A	T	G	E	A	G	C	G	K	T	W	I	S	A	A	K	A	A	E	A	L	I	H	K	D	V	D	R	I	I	V	T	R	P	V	L	Q	A	D	E	D	L	G	F	L	P	G	D	I	A	E	K	F	A
Query Conservation
Alig confidence																																																				.																		.	.	.	.	.	.	.
Template Conservation																																																				.																		.	.	.	.	.	.	.
Template Sequence		T	A	Q	G	L	P	D	L	N	H	S	Q	V	Y	A	V	K	T	V	L	Q	R	P	L	S	L	I	Q	G	P	P	G	T	G	K	T	V	T	S	A	T	I	V	Y	H	L	A	R	Q	G	.	N	G	P	V	L	V	C	A	P	S	N	I	A	V	D	Q	L	.	.	.	.	.	.	.	T	E	K	I	H
Template Known Secondary structure		S		T	T	S															T	T	S	S								T	T	S																T		.	S	S							S	S								.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.																		.	.	.	.	.	.	.
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.		.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530								.	.	.	.	.
		225																					.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.																									.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	F	R	P	V	Y	D	V	L	V	R	R	L	G	A	S	F	M	Q	Y	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	P	E	I	G	K	V	E	I	A	P	F	A
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	T	G	L	K	V	V	R	L	C	A	K	S	R	E	A	I	D	S	P	V	S	F	L	A	L	H	N	Q	I	R	N	M	D	S	M	P	E	L	Q	K	L	Q	Q	L	K	D	E	S	S	A	D	E	K	R	Y	R	A	L	K	R	T	A	E	R	E	L	L	M	N	A	D	V	I	C	C	T	C	V	G
Template Known Secondary structure		T	T	T									G	G	G	T	T				T	T	G	G	G	B							T		T	T		T	T																																		S						T	G	G
Template Predicted Secondary structure
Template SS confidence
		536	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.
		261	.	.	.	.			.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		Y	M	R	G	R	.	.	T	F	E	N	A	V	V	I	L	D	E	A	Q	N	V	T	A	A	Q	M	K	M	F	L	T	R	L	G	E	N	V	T	V	I	V	N	G	D	I	T	Q
Query Conservation							.	.
Alig confidence							.	.																									.	.
Template Conservation																																	.	.
Template Sequence		A	G	D	P	R	L	A	K	M	Q	F	R	S	I	L	I	D	E	S	T	Q	A	T	E	P	E	C	M	V	P	V	.	.	V	L	G	A	K	Q	L	I	L	V	G	D	H	C	Q
Template Known Secondary structure		G	G		G	G	G	T	T				S					S	S	G	G	G	S										.	.	T	T	T	B	S								T	T	S
Template Predicted Secondary structure																																	.	.
Template SS confidence
		620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650			.	.	.	.	.	.	.	.	.	660	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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