Job Description P0A9K1 Confidence 98.49% Date Wed Jan 25 15:20:20 GMT 2012 Rank 25 Aligned Residues 139 % Identity 18% Template c2eyqA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor Resolution 3.20 Å

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		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.							.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.
Query Sequence		R	D	S	R	D	T	S	P	I	L	A	R	N	E	A	Q	L	H	Y	L	K	A	I	.	.	.	.	.	.	E	S	K	Q	L	I	F	A	T	G	E	A	G	C	G	K	T	W	I	S	A	A	K	A	A	E	A	L	I	H	K	D	V	D	R	I	I	V	T	R	P	V	L	Q	A	D	E	D	L	G	F
Query Conservation																									.	.	.	.	.	.
Alig confidence													.												.	.	.	.	.	.																																.	.																	.	.
Template Conservation													.																																																	.	.																	.	.
Template Sequence		Q	L	F	C	D	S	F	P	F	E	T	.	T	P	D	Q	A	Q	A	I	N	A	V	L	S	D	M	C	Q	P	L	A	M	D	R	L	V	C	G	D	V	G	F	G	K	T	E	V	A	M	R	A	A	F	L	A	V	D	N	H	.	.	K	Q	V	A	V	L	V	P	T	T	L	L	A	Q	Q	H	.	.
Template Known Secondary structure							T			S			.																	S	S	S												T	T	T													T	T	T	.	.								S	S								.	.
Template Predicted Secondary structure													.																																																	.	.																	.	.
Template SS confidence
		591	.	.	.	.	.	.	.	.	600	.		.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.			650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240																			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Query Sequence		L	P	G	D	I	A	E	K	F	A	P	Y	F	R	P	V	Y	D	V	L	V	R	R	L	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	F	M	Q	Y	C	L	R	P	E	I	G	K	V	E	I	A	P	F	A	Y	M	R	G	R	T	F	E	N	.	A	V	V	I	L	D
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	D	N	F	R	D	R	F	A	N	W	P	V	R	I	E	M	I	S	R	F	R	S	A	K	E	Q	T	Q	I	L	A	E	V	A	E	G	K	I	D	I	L	I	G	T	H	K	L	L	Q	S	D	V	K	F	K	D	L	G	L	L	I	V	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	T	T	T	T							S	T	T	S														T	T			S						T					S					S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																		666	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	Q	N	V	T	A	A	Q	M	K	M	F	L	T	R	L	G	E	N	V	T	V	I	V	N
Query Conservation
Alig confidence											.
Template Conservation											.
Template Sequence		E	E	H	R	F	G	V	R	H	.	K	E	R	I	K	A	M	R	A	N	V	D	I	L	T	L
Template Known Secondary structure		S	G	G	G	S					.									T	T	S
Template Predicted Secondary structure											.
Template SS confidence
		730	.	.	.	.	.	.	.	.		.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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