Job Description P0A9K1 Confidence 96.35% Date Wed Jan 25 15:20:20 GMT 2012 Rank 216 Aligned Residues 163 % Identity 13% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	K	Q	L	I	F	A	T	G	E	A	G	C	G	K	T	W	I	S	A	A	K	A	A	E	A	L	I	H	K	D	V	D	R	I	I	V	T	R	P	V	L	Q	A	D	E	D	L	G	F	L	P	G	D	I	A	E	K	F	A	P	Y	F	R	P	V	Y	D	V	L	V	R	R	L	G	A	S	F	M
Query Conservation
Alig confidence																																	.	.										.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.										.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template Sequence		K	L	P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	.	.	Y	K	V	G	L	V	A	A	D	.	.	.	.	.	.	.	V	Y	R	P	A	A	Y	D	Q	.	.	.	.	.	.	.	.	.	L	L	Q	L	G	N	Q	I	G	V	Q	V	Y
Template Known Secondary structure		S	S	S								S	S	S	S	S	S	T	T	T										T	T	S	.	.					B					.	.	.	.	.	.	.		S	S	S		S				.	.	.	.	.	.	.	.	.								T	T
Template Predicted Secondary structure																																	.	.										.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.								.	.	.	.	.	.	140	.	.										.	.	.	.	.	.	.	150	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.				.	.	280	.					.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.					.	.	.	.
Query SS confidence																																				.	.	.					.	.	.	.
Query Sequence		Q	Y	C	L	R	P	E	I	G	K	V	E	I	A	P	F	A	Y	M	R	G	R	T	F	E	N	A	V	V	I	L	D	E	A	.	.	.	Q	N	V	T	.	.	.	.	A	A	Q	M	K	M	F	L	T	R	L	G	E	N	V	T	V	I	V	N	G	D	I	T	Q	C	D	L	P	R	G	V	C	S	G
Query Conservation																																				.	.	.					.	.	.	.
Alig confidence																											.	.								.	.	.					.	.	.	.																												.	.	.	.	.	.	.
Template Conservation																											.	.																																														.	.	.	.	.	.	.
Template Sequence		G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V	D	I	F	V	K	N	K	M	D	.	.	I	I	I	V	D	T	A	G	R	H	G	Y	G	E	E	T	K	L	L	E	E	M	K	E	M	Y	D	V	L	K	P	D	D	V	I	L	V	I	D	A	S	I	G	Q	K	.	.	.	.	.	.	.	A
Template Known Secondary structure				S	S				T	T													T	T		S	.	.									S			S	S	T																		S								T	T	T	G	G	G	.	.	.	.	.	.	.	G
Template Predicted Secondary structure																											.	.																																														.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.								.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	D	A	L	E	R	F	E	E	D	E	M	V	G	I	V	R	F	G	K	E	D	C	V	R	S	A	L	C	Q	R	T	L	H	A	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	D	L	A	S	R	F	H	Q	A	S	P	I	G	S	V	I	I	T	K	M	D	G	T	A	K	G	G	G	A	L	S	A	V	V	A	T
Template Known Secondary structure										T	T		S	S								S	S	S		S			T								T	T
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions