Job Description P0ACN4 Confidence 100.00% Date Thu Jan 5 11:18:36 GMT 2012 Rank 7 Aligned Residues 238 % Identity 26% Template c2xroE_ PDB info PDB header:dna-binding protein/dna Chain: E: PDB Molecule:hth-type transcriptional regulator ttgv; PDBTitle: crystal structure of ttgv in complex with its dna operator Resolution 3.40 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	L	E	R	G	I	A	I	L	Q	Y	L	E	K	S	G	G	S	S	S	V	S	D	I	S	L	N	L	D	L	P	L	S	T	T	F	R	L	L	K	V	L	Q	A	A	D	F	V	Y	Q	D	S	Q	L	G	W	W	H	I	G	L	G	V	F	N	V	G	A	A	Y	I	H	N	R	D	V	L	S	V
Query Conservation
Alig confidence																																																																								.	.
Template Conservation																																																																								.	.
Template Sequence		Q	V	I	A	R	A	A	S	I	M	R	A	L	G	S	H	P	H	G	L	S	L	A	A	I	A	Q	L	V	G	L	P	R	S	T	V	Q	R	I	I	N	A	L	E	E	E	F	L	V	E	A	L	G	P	A	G	G	F	R	L	G	P	A	L	G	Q	L	I	N	Q	.	.	A	Q	T	D	I	L	S	L
Template Known Secondary structure																		T	T		B									S	S															T	T	T	S					S	S	S	S						T								T	.	.	T	T	T	T
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.	.	.	.	90	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	P	F	M	R	R	L	M	L	L	S	G	E	T	V	N	V	A	I	R	N	G	N	E	A	V	L	I	G	Q	L	E	C	K	S	M	V	R	M	C	A	P	L	G	S	R	L	P	L	H	A	S	G	A	G	K	A	L	L	Y	P	L	A	E	E	E	L	M	S	I	I	L	Q	T	G	L	Q	Q	F
Query Conservation
Alig confidence																																																																												.
Template Conservation																																																																												.
Template Sequence		V	K	P	Y	L	R	S	L	A	E	E	L	D	E	S	V	S	L	A	S	L	A	G	D	K	I	Y	V	L	D	R	I	V	S	E	R	E	L	R	V	V	F	P	I	G	I	N	V	P	A	A	A	T	A	A	G	K	V	L	L	A	A	L	P	D	E	T	L	Q	A	A	L	G	E	.	Q	L	P	V	L
Template Known Secondary structure													S		S									T	T												S	S	S						T	T					T	T	T	S									S	S		T	T					T	T		S	.	S
Template Predicted Secondary structure																																																																												.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	T	T	L	V	D	M	P	T	L	L	K	D	L	E	Q	A	R	E	L	G	Y	T	V	D	K	E	E	H	V	V	G	L	N	C	I	A	S	A	I	Y	D	D	V	G	S	V	V	A	A	I	S	I	S	G	P	S	S	R	L	T	E	D	R	F	V	S	Q	G	E	L	V	R	D	T	A	R	D	I
Query Conservation
Alig confidence							.																																									.	.																		.
Template Conservation							.																																									.	.																		.
Template Sequence		T	S	N	T	L	.	G	R	K	A	L	V	K	Q	L	S	E	V	R	Q	S	G	V	A	S	D	L	D	E	H	I	D	G	V	S	S	F	A	T	L	L	D	T	Y	L	G	.	.	Y	Y	S	L	A	I	V	M	P	S	S	R	A	S	K	Q	S	.	D	L	I	K	K	A	L	L	Q	S	K	L	N	I
Template Known Secondary structure		S	S	S			.																S						S	S	S	S	T	T											T	T		.	.										S	T	T	T	T	T	S	S	.
Template Predicted Secondary structure							.																																									.	.																		.
Template SS confidence
		172	.	.	.	.		.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.
		262	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	A	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	R	A	I	G
Template Known Secondary structure			T	T	S
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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