Job Description P0A6J5 Confidence 99.77% Date Thu Jan 5 11:03:18 GMT 2012 Rank 29 Aligned Residues 398 % Identity 14% Template c3nksA_ PDB info PDB header:oxidoreductase/oxidoreductase inhibitor Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: structure of human protoporphyrinogen ix oxidase Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																								.	.																			.	.	.
Query SS confidence																								.	.																			.	.	.
Query Sequence		R	V	V	I	L	G	S	G	V	V	G	V	A	S	A	W	Y	L	N	Q	A	G	.	.	H	E	V	T	V	I	D	R	E	P	G	A	A	L	E	T	S	A	.	.	.	A	N	A	G	Q	I	S	P	G	Y	A	A	P	W	A	A	P	G	V	P	L	K	A	I	K	W	M	F	Q	R	H	A	P	L	A
Query Conservation																								.	.																			.	.	.
Alig confidence																								.	.																			.	.	.
Template Conservation
Template Sequence		T	V	V	V	L	G	G	G	I	S	G	L	A	A	S	Y	H	L	S	R	A	P	C	P	P	K	V	V	L	V	E	S	S	E	R	L	G	G	W	I	R	S	V	R	G	P	N	G	A	I	F	E	L	G	P	R	G	I	R	P	A	G	A	L	G	A	R	T	L	L	L	V	S	E	L	G	L	D	S	E
Template Known Secondary structure									B												T	S	S	S									S	S	S	S	S	B	T	T							T	T	S					S	S				B																	T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		V	R	L	D	G	T	Q	F	Q	L	K	W	M	W	Q	M	L	R	N	C	D	T	S	H	Y	M	E	N	K	G	R	.	.	M	V	R	L	A	E	Y	S	R	D	C	L	K	A	L	R	A	E	T	N	I	Q	Y	E	G	R	Q	G	G	T	L	Q	L	F	R	T	E	Q	Q	Y	E	N	A	T	R	D	I
Query Conservation																																	.	.
Alig confidence																																	.	.
Template Conservation
Template Sequence		V	L	P	V	R	G	D	H	P	A	A	Q	N	R	F	L	Y	V	G	G	A	L	H	A	L	P	T	G	L	R	G	P	S	P	P	F	S	K	P	L	F	W	A	G	L	R	E	L	T	K	P	R	G	K	E	P	D	E	T	V	H	S	F	A	Q	R	R	L	G	P	E	V	A	S	L	A	M	D	S	L
Template Known Secondary structure							T	T	S											T	T								S	S					T	T	S		S		S	S					T	T	T	T	S					S	S			B																	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.																				.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	V	L	E	D	A	G	V	P	Y	Q	L	L	E	S	S	R	L	A	E	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	L	A	E	V	A	H	K	L	T	G	G	L	Q	L	P	N	D	E	T	G	D	C	Q	L	F	T	Q	N	L	A	R	M	A	E	Q	A	G
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation																																																															.	.	.
Template Sequence		C	R	G	V	F	A	G	N	S	R	E	L	S	I	R	S	C	F	P	S	L	F	Q	A	E	Q	T	H	R	S	I	L	L	G	L	L	L	G	Q	P	D	S	A	L	I	R	Q	A	L	A	E	R	W	S	Q	W	S	L	R	G	G	.	.	.	L	E	M	L	P	Q	A	L	E	T	H	L	T	S	R	G
Template Known Secondary structure							S	S		T	T	T	B	B																S																						T	T		S					T	T		.	.	.	T	T													T	T
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.				.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.										.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.
Query Sequence		V	K	F	R	F	N	T	P	V	D	Q	L	L	C	D	G	E	Q	I	Y	G	V	K	C	G	D	E	V	I	K	A	D	A	Y	V	M	A	F	G	S	Y	S	.	.	.	.	.	.	.	.	.	T	A	M	L	K	G	I	V	D	I	P	V	Y	P	L	K	G	Y	S	L	T	I	P	I	A	Q	E	D	G
Query Conservation																																												.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	S	V	L	R	G	Q	P	V	C	G	L	S	L	Q	A	E	G	R	W	K	V	S	L	R	D	S	S	L	E	A	D	H	V	I	S	A	I	P	A	S	V	L	S	E	L	L	P	A	E	A	A	P	L	A	R	A	L	S	A	I	T	A	V	S	V	A	V	V	N	L	Q	Y	Q	G	A	H	L	P	V
Template Known Secondary structure							S										G	G	G							S	S						S						S									S		G	G	G									T														T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.														.	.	.	.	.	.	.	310	.	.	.	.	.								.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Query Sequence		A	P	V	S	T	I	L	D	E	T	Y	K	I	A	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	R	F	D	N	R	I	R	V	G	G	M	A	E	.	.	.	.	.	.	.	I	V	G	F	N	T	E	L	L	Q	P	R	R	E	T	L	E	M	V	V	R	D	L	Y	P	R	G	G	H	V	E
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	G	F	G	H	L	V	P	S	S	E	D	P	G	V	L	G	I	V	Y	D	S	V	A	F	P	E	Q	D	G	S	P	P	G	L	R	V	T	V	M	L	G	G	S	W	L	Q	T	L	E	A	S	G	C	V	L	S	Q	E	L	F	Q	Q	R	A	Q	E	A	A	A	T	Q	L	G	L	K	E	M	P	S
Template Known Secondary structure			S	S						T	T	T		S	S												G	G	G	S	T	T	T	T																			S	S																								S			S
Template Predicted Secondary structure
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
					347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.							.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure		.	.	.																							.	.	.	.	.	.									.
Query SS confidence		.	.	.																							.	.	.	.	.	.									.
Query Sequence		.	.	.	Q	A	T	F	W	T	G	L	R	P	M	T	P	D	G	T	P	V	V	G	R	T	.	.	.	.	.	.	R	F	K	N	L	W	L	N	.	T	G	H	G	T	L	G	W	T	M	A	C	G	S	G	Q	L	L	S	D	L	L	S	G	R	T
Query Conservation		.	.	.																							.	.	.	.	.	.									.
Alig confidence		.	.	.																							.	.	.	.	.	.									.
Template Conservation
Template Sequence		H	C	L	V	H	L	H	K	N	C	I	P	Q	Y	T	L	G	H	W	Q	K	L	E	S	A	R	Q	F	L	T	A	H	R	L	P	L	T	L	A	G	A	S	Y	E	G	V	A	V	N	D	C	I	E	S	G	R	Q	A	A	V	S	V	L	G	T	E
Template Known Secondary structure																B	T	T															T	T		S					S	T	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.