Job Description P0A6J5 Confidence 99.78% Date Thu Jan 5 11:03:18 GMT 2012 Rank 28 Aligned Residues 386 % Identity 11% Template c3k7tB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:6-hydroxy-l-nicotine oxidase; PDBTitle: crystal structure of apo-form 6-hydroxy-l-nicotine oxidase,2 crystal form p3121 Resolution 2.85 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		V	V	I	L	G	S	G	V	V	G	V	A	S	A	W	Y	L	N	Q	A	G	H	E	V	T	V	I	D	R	E	P	G	A	A	L	E	T	S	A	.	.	.	A	N	A	G	Q	I	S	P	G	Y	A	A	P	W	A	A	P	G	V	P	L	K	A	I	K	W	M	F	Q	R	H	A	P	L	A	V	R	L
Query Conservation																																									.	.	.
Alig confidence																																									.	.	.
Template Conservation
Template Sequence		A	I	V	V	G	G	G	F	S	G	L	K	A	A	R	D	L	T	N	A	G	K	K	V	L	L	L	E	G	G	E	R	L	G	G	R	A	Y	S	R	E	S	R	N	V	P	G	L	R	V	E	I	G	G	A	Y	L	H	R	K	H	H	P	R	L	A	A	E	L	D	R	Y	G	I	P	T	A	A	A	S
Template Known Secondary structure								B														T								S	S	S	S	S	B	T	T							S	S	S	S	S					S	S				B		T	T	T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.						.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.
Query Sequence		D	G	T	Q	F	Q	L	K	W	M	W	Q	M	L	R	N	C	D	T	S	H	Y	M	E	N	K	G	R	M	V	R	L	A	E	Y	S	R	D	C	L	K	A	L	R	A	E	T	N	I	Q	Y	E	G	R	Q	G	G	T	.	.	.	.	.	L	Q	L	F	R	T	E	Q	Q	Y	E	N	A	T	R	D	I
Query Conservation																																																												.	.	.	.	.
Alig confidence																																																												.	.	.	.	.
Template Conservation
Template Sequence		E	F	T	S	F	R	H	R	L	G	P	T	A	V	D	Q	A	F	P	I	P	G	S	E	A	V	A	V	E	A	A	T	Y	T	L	L	R	D	A	H	R	I	D	L	E	K	G	L	E	N	Q	D	L	E	D	L	D	I	P	L	N	E	Y	V	D	K	L	D	L	P	P	V	S	R	Q	F	L	L	A	W
Template Known Secondary structure									B	S		T	T	S		S	S	S	S				G	G	G																	T			T	T	T		T	T	S	S	S		T	T	T		S	B
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	L	E	D	A	G	V	P	Y	Q	L	L	E	S	S	R	L	A	E	V	E	P	A	L	A	E	V	A	H	K	L	T	G	G	L	Q	L	P	N	D	E	T	G	D	C	Q	L	F	T	Q	N	L	A	R	M	A	E	Q	A	G	V	K	F	R	F	N	T	P	V	D	Q	L	L	C	D	G	E	Q	I
Query Conservation
Alig confidence																																												.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.
Template Sequence		A	W	N	M	L	G	Q	P	A	D	Q	A	S	A	L	W	M	L	Q	L	V	A	A	H	H	Y	S	I	L	G	V	V	L	S	L	D	E	V	F	S	N	G	.	.	.	.	.	.	.	S	A	D	L	V	D	A	M	S	Q	E	I	P	E	I	R	L	Q	T	V	V	T	G	I	D	Q	S	G	D	V	V
Template Known Secondary structure							S	S		T	T	T	S	B											T	T	S		S					T	T						S	S		.	.	.	.	.	.	.	T									T	T		S				S	S									S	S	S	S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.								.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.												.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	G	V	K	C	G	D	E	V	I	K	A	D	A	Y	V	M	A	F	G	S	Y	S	.	.	.	.	.	.	.	.	.	.	.	T	A	M	L	K	G	I	V	D	I	P	V	Y	P	L	K	G	Y	S	L	T	I	P	I	A	Q	E	D	G	A	P	V	S	T	I	L	D	E	T	Y	K	I	A	I	T	R
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	V	T	V	K	D	G	H	A	F	Q	A	H	S	V	I	V	A	T	P	M	N	T	W	R	R	I	V	F	T	P	A	L	P	E	R	R	R	S	V	I	E	E	G	H	G	G	Q	G	L	K	I	L	I	H	V	R	G	A	E	A	G	I	E	C	V	G	D	G	I	F	P	T	L	Y	D	Y	C	E	V
Template Known Secondary structure						S	S	S												S		G	G	G	T	T	T	S				S											T	T															S			T	T					B	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350												.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	D	N	R	I	R	V	G	G	M	A	E	I	V	G	F	N	T	E	L	L	Q	P	R	R	E	T	L	E	M	V	V	R	D	L	Y	P	R	G	G	H	V	E	Q	A	T	F	.	.	.	.	.	.	.	.	.	.	.	W	T	G	L	R	P	M	T	P	D	G	T	P	V	V	G	R	T	R	F	K	N
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.
Template Sequence		S	E	S	E	R	L	L	V	A	F	T	D	S	G	S	F	D	P	T	D	.	.	.	.	I	G	A	V	K	D	A	V	L	Y	Y	L	P	E	V	E	V	L	G	I	D	Y	H	D	W	I	A	D	P	L	F	E	G	P	W	V	A	P	R	V	G	Q	F	S	R	V	H	K	E	L	G	E	P	A	G	R
Template Known Secondary structure		S	S	S										T	T	T			S	S		.	.	.	.										T	T		T	T											T	T	T		T	T	T	S		S	S					T	T					S	S	G	G	G	G	S			S	S
Template Predicted Secondary structure																						.	.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.					.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		373	.	.	.	.	.	.	380	.	.	.					.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.
Query SS confidence													.	.	.	.
Query Sequence		L	W	L	N	T	G	H	G	T	L	G	.	.	.	.	W	T	M	A	C	G	S	G	Q	L	L	S	D	L	L	S
Query Conservation													.	.	.	.
Alig confidence													.	.	.	.
Template Conservation
Template Sequence		I	H	F	V	G	S	D	V	S	L	E	F	P	G	Y	I	E	G	A	L	E	T	A	E	C	A	V	N	A	I	L
Template Known Secondary structure						S	S	T	T		S	S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions