Job Description P0A6J5 Confidence 98.98% Date Thu Jan 5 11:03:18 GMT 2012 Rank 158 Aligned Residues 244 % Identity 7% Template c3ic9D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: the structure of dihydrolipoamide dehydrogenase from colwellia2 psychrerythraea 34h. Resolution 2.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.			.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.
Query SS confidence				.	.
Query Sequence		M	R	.	.	V	V	I	L	G	S	G	V	V	G	V	A	S	A	W	Y	L	N	Q	A	G	H	E	V	T	V	I	D	R	E	P	G	A	A	L	E	T	S	A	A	N	A	G	Q	I	S	P	G	Y	A	A	P	W	A	A	P	G	V	P	L	K	A	I	K	W	M	F	Q	R	H	A	P	L	A	V	R
Query Conservation				.	.
Alig confidence				.	.																																				.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.
Template Sequence		I	N	V	D	V	A	I	I	G	T	G	T	A	G	X	G	A	Y	R	A	A	K	K	H	T	D	K	V	V	L	I	E	G	G	A	Y	G	T	T	.	.	.	.	.	.	.	.	.	.	C	A	R	V	G	C	X	P	S	K	L	L	I	A	A	A	D	A	S	Y	H	A	S	Q	T	D	L	F	G	I	Q
Template Known Secondary structure												S												T	T		S							S	S		S	S			.	.	.	.	.	.	.	.	.	.					S																		T		G	G	G	G	T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.											.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.																	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	D	G	T	Q	F	Q	L	K	W	M	W	Q	M	L	R	N	C	D	T	S	H	Y	M	E	N	K	G	R	M	V	R	L	A	E	Y	S	R	D	C	L	K	A	L	R	A	E	T	N	I	Q	Y	E	G	R	Q	G	G	T	L	Q	L	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	R	I	S	V	N	G	K	A	V	X	K	R	I	Q	T	E	R	D	R	F	V	G	F	V	V	E	S	V	E	S	F	D	E	Q	D	K	I	R	G	F	A	K	F	L	D	E	H	T	L	Q	V	D	D	H	S	Q	V	I	A	K	R	I	V	I	A	T	G	S	R	P	N	Y	P	E	F	L	A	A
Template Known Secondary structure			S																															S		G	G	G				S							T	T					T	T	T																								T
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	E	Q	Q	Y	E	N	A	T	R	D	I	A	V	L	E	D	A	G	V	P	Y	Q	L	L	E	S	S	R	L	A	E	V	E	P	A	L	A	E	V	A	H	K	L	T	G	G	L	Q	L	P	N	D	E	T	G	D	C	Q	L	F	T	Q	N	L	A	R	M	A	E	Q	A	G	V	K	F	R	F	N	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	S	R	L	L	T	N	D	N	L	F	E	L	N	D	L	P	K	S	V	A	V	F	G	P	G	V	I	G	L	E	L	G	Q	A	L	S	R	L	G	V	I	V	K	V	F	G	R	S	G	S	V	A	N	L	Q	D	E	E	X	K	R	Y	A	E	K	T	F	N	E	E	F	Y	F	D	A	K	A	R
Template Known Secondary structure		T	G	G	G								T	T		S	S			S								S													T	T								S	S	S			T	T			S													T	T	S				T	T
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.				.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		P	V	D	Q	L	L	C	D	G	E	Q	I	Y	G	V	K	C	G	D	.	.	.	E	V	I	K	A	D	A	Y	V	M	A	F	G
Query Conservation																					.	.	.
Alig confidence																					.	.	.
Template Conservation
Template Sequence		V	I	S	T	I	E	K	E	D	A	V	E	V	I	Y	F	D	K	S	G	Q	K	T	T	E	S	F	Q	Y	V	L	A	A	T	G
Template Known Secondary structure									S	S	S								T	T	S								S						S
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions