Job Description P0A6J5 Confidence 99.53% Date Thu Jan 5 11:03:18 GMT 2012 Rank 57 Aligned Residues 387 % Identity 13% Template c3bnuA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:polyamine oxidase fms1; PDBTitle: crystal structure of polyamine oxidase fms1 from2 saccharomyces cerevisiae in complex with bis-(3s,3's)-3 methylated spermine Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.																	.
Query SS confidence																								.																	.
Query Sequence		R	V	V	I	L	G	S	G	V	V	G	V	A	S	A	W	Y	L	N	Q	A	G	.	H	E	V	T	V	I	D	R	E	P	G	A	A	L	E	T	.	S	A	A	N	A	G	Q	I	S	P	G	Y	A	A	P	W	A	A	P	G	V	P	L	K	A	I	K	W	M	F	Q	R	H	A	P	L	A	V	R	L
Query Conservation																								.																	.
Alig confidence																								.																	.
Template Conservation
Template Sequence		K	V	I	I	I	G	A	G	I	A	G	L	K	A	A	S	T	L	H	Q	N	G	I	Q	D	C	L	V	L	E	A	R	D	R	V	G	G	R	L	Q	T	V	T	G	Y	Q	G	R	K	Y	D	I	G	A	S	W	H	H	D	T	L	T	N	P	L	F	L	E	E	A	Q	L	S	L	N	D	G	R	T	R
Template Known Secondary structure									B													T	T			S						S	S	S	S	S	B	T	T							G	G	G					S	S							T	T	T
Template Predicted Secondary structure
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	T	Q	F	Q	L	K	W	M	W	Q	M	L	R	N	C	D	T	S	H	Y	M	E	N	K	G	R	M	V	R	L	A	E	Y	S	R	D	C	L	K	A	L	R	A	E	T	N	I	Q	Y	E	G	R	Q	G	G	T	L	Q	L	F	R	T	E	Q	Q	Y	E	N	A	T	R	D	I	A	V	L	E	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	F	D	D	D	N	F	I	Y	I	D	E	E	R	G	R	V	D	H	D	K	E	L	L	L	E	I	V	D	N	E	M	S	K	F	A	E	L	E	F	H	Q	H	L	G	V	S	D	C	S	F	F	Q	L	V	M	K	Y	L	L	Q	R	R	Q	F	L	T	N	D	Q	I	R	Y	L	P	Q	L	C	R
Template Known Secondary structure														T	T	T				T	T		T	T	T																	S	S	S		S	S					B													G	G	G	S													G
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	V	P	Y	Q	L	L	E	S	S	R	L	A	E	V	E	P	A	L	A	E	V	A	H	K	L	T	G	G	L	Q	L	P	N	D	E	T	G	D	C	Q	L	F	T	Q	N	L	A	R	M	A	E	Q	A	G	V	K	F	R	F	N	T	P	V	D	Q	L	L	C	D	G	E	Q	I	Y	G	V	K	C
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.																				.	.
Template Conservation																												.	.	.	.	.	.	.	.	.																				.	.
Template Sequence		Y	L	E	L	W	H	G	L	D	W	K	L	L	S	A	K	D	T	Y	F	G	H	Q	G	R	N	.	.	.	.	.	.	.	.	.	A	F	A	L	N	Y	D	S	V	V	Q	R	I	A	Q	S	F	P	Q	.	.	N	W	L	K	L	S	C	E	V	K	S	I	T	R	E	P	S	K	N	V	T	V	N	C
Template Known Secondary structure		G	G					T	B		T	T	T	S	B					S					S			.	.	.	.	.	.	.	.	.				S												T	S		G	.	.	G	G				S										T	T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.																				.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.										.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.			.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.																								.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	D	E	V	I	K	A	D	A	Y	V	M	A	F	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	T	A	M	L	K	G	I	V	D	I	P	V	Y	P	L	K	G	Y	S	L	T	I	P	I	A	Q	E	D	G	A	P	V	S	T	I	L	D	E	T
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	D	G	T	V	Y	N	A	D	Y	V	I	I	T	V	P	Q	S	V	L	N	L	S	V	Q	P	E	K	N	L	R	G	R	I	E	F	Q	P	P	L	K	P	V	I	Q	D	A	F	D	K	I	H	F	G	A	L	G	K	V	I	F	E	F	E	E	C	C	W	S	N	E	S	S	K	I	V	T	L	A	N
Template Known Secondary structure		T	T	S																		G	G	G	G	S	S		S		S	T	T						S										T	T	S														S	S			S			S		S
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		297	.	.	300	.	.																																					.	.	.	.	.	.	.	310	.	.	.	.	.	.	.					.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Query Sequence		Y	K	I	A	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	F	D	N	R	I	R	V	G	G	M	A	E	I	V	.	.	.	.	G	F	N	T	E	L	L	Q	P	R	R	E	T	L	E	M	V	V	R
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation
Template Sequence		S	T	N	E	F	V	E	I	V	R	N	A	E	N	L	D	E	L	D	S	M	L	E	R	E	T	S	V	T	C	W	S	Q	P	L	F	F	V	N	L	S	K	S	T	G	V	A	S	F	M	M	L	M	Q	A	P	L	T	N	H	I	E	S	I	R	E	D	K	E	R	L	F	S	F	F	Q	P	V	L	N
Template Known Secondary structure															S																T	T	S	S											T	S		S								B	T							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.																							.	.	.	.	.	.	.	360	.	.	.						.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.					.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.																					.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.																					.	.	.	.
Query Sequence		D	L	Y	P	R	G	G	H	V	E	Q	A	T	F	W	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	R	P	M	T	P	D	G	T	P	.	.	.	.	.	V	V	G	R	T	R	F	K	N	L	W	L	N	T	G	H	G	T	L	G	.	.	.	.	W	T
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.																					.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.																					.	.	.	.
Template Conservation
Template Sequence		K	I	M	K	C	L	D	S	E	D	V	I	D	G	M	R	A	N	K	P	V	L	R	N	I	I	V	S	N	W	T	R	D	P	Y	S	R	G	A	Y	S	A	C	F	P	G	D	D	P	V	D	M	V	V	A	M	S	N	G	Q	D	S	R	I	R	F	A	G	E	H	T	I	M	D	G	A	G	C	A	Y
Template Known Secondary structure							T	T												S											T	T	T		T	T	T	S	S	S						T	T														S	S	S	S					S	T	T	S		S	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	C	G	S	G	Q	L	L	S	D	L	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	A	W	E	S	G	R	R	E	A	T	R	I	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		491	.	.	.	.	.	.	.	.	500	.	.	.	.