Job Description P0A6J5 Confidence 99.69% Date Thu Jan 5 11:03:18 GMT 2012 Rank 41 Aligned Residues 399 % Identity 13% Template c2yg4B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:putrescine oxidase; PDBTitle: structure-based redesign of cofactor binding in putrescine2 oxidase: wild type bound to putrescine Resolution 2.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	V	I	L	G	S	G	V	V	G	V	A	S	A	W	Y	L	N	Q	A	G	H	E	V	T	V	I	D	R	E	P	G	A	A	L	E	T	S	A	A	N	A	G	Q	I	S	P	G	Y	A	A	P	W	A	A	P	G	V	P	L	K	A	I	K	W	M	F	Q	R	H	A	P	L	A	V	R	L	D	G
Query Conservation
Alig confidence																																																														.
Template Conservation																																																														.
Template Sequence		D	V	A	I	V	G	A	G	P	S	G	L	A	A	A	T	A	L	R	K	A	G	L	S	V	A	V	I	E	A	R	D	R	V	G	G	R	T	W	T	D	T	I	D	G	A	V	L	E	I	G	G	Q	W	V	S	P	D	Q	T	.	A	L	I	S	L	L	D	E	L	G	L	K	T	F	E	R	Y	R	E
Template Known Secondary structure									S													T	T								S	S	S	S	S		T	T							T	T						S				B		T	T			.									T	T
Template Predicted Secondary structure																																																														.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.								.	.	150	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.
Query Sequence		T	Q	F	Q	L	K	W	M	W	Q	M	L	R	N	C	D	T	S	H	Y	M	E	N	K	G	R	M	V	R	L	A	E	Y	S	R	D	C	L	K	A	L	R	A	E	T	N	I	Q	Y	E	G	R	Q	G	G	T	L	Q	L	F	R	T	E	Q	Q	Y	.	.	.	.	.	.	.	E	N	A	T	R	D	I
Query Conservation																																																																				.	.	.	.	.	.	.
Alig confidence																																																																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	S	V	Y	I	S	S	A	G	E	R	T	R	Y	T	G	D	S	F	P	T	N	E	T	T	K	K	E	M	D	R	L	I	D	E	M	D	D	L	A	A	Q	I	G	A	E	E	P	W	A	H	P	L	A	R	D	L	D	T	V	S	F	K	Q	W	L	I	N	Q	S	D	D	A	E	A	R	D	N	I
Template Known Secondary structure		S							T	T								S	S	S																											S	S		G	G	G	S	T	T						T	S	B										S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	L	E	D	A	G	V	P	Y	Q	L	L	E	S	S	R	L	A	E	V	E	P	A	L	A	E	V	A	H	K	L	T	G	G	L	Q	L	P	N	D	E	T	G	D	C	Q	L	F	T	Q	N	L	A	R	M	A	E	Q	A	G	V	K	F	R	F	N	T	P	V	D	Q	L	L	C	D	G	E	Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	F	I	A	G	G	M	L	T	K	P	A	H	S	F	S	A	L	Q	A	V	L	M	A	A	S	A	G	S	F	S	H	L	V	D	E	D	F	I	L	D	K	R	V	I	G	G	M	Q	Q	V	S	I	R	M	A	E	A	L	G	D	D	V	F	L	N	A	P	V	R	T	V	K	W	N	E	S	G	A
Template Known Secondary structure												S		T	T	S	S	B											T	T												T					T	T		T												G	G	G				S										T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.												.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Query Sequence		Y	G	V	K	C	G	D	E	V	I	K	A	D	A	Y	V	M	A	F	.	.	.	.	.	.	.	.	.	.	.	G	S	Y	S	T	A	M	L	K	G	I	V	D	I	P	V	Y	P	L	K	G	Y	S	L	T	I	P	I	A	Q	E	D	G	A	P	V	S	T	I	L	D	E	T	Y	.	.	.	.	.	.
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.																																													.	.	.	.	.	.
Template Conservation
Template Sequence		T	V	L	A	D	G	D	I	R	V	E	A	S	R	V	I	L	A	V	P	P	N	L	Y	S	R	I	S	Y	D	P	P	L	P	R	R	Q	H	Q	M	H	Q	H	Q	S	L	G	L	V	I	K	V	H	A	V	Y	E	T	P	F	W	R	E	D	G	L	S	G	T	G	F	G	A	S	E	V	V	Q	E	V
Template Known Secondary structure						T	T	T												S		G	G	G	G	G	G	S				S												T														S	S		G	G	G	G	G	T								T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.				.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.												.	.	.	.	.	360	.	.	.
Predicted Secondary structure																				.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	A	I	T	R	F	D	N	R	I	R	V	G	G	M	A	E	.	.	.	I	V	G	F	N	T	E	L	L	Q	P	R	R	E	T	L	E	M	V	V	R	D	L	Y	P	R	G	G	H	V	E	Q	A	T	F	W	T	G	L	.	.	.	.	.	.	.	.	.	.	.	R	P	M	T	P	D	G	T	P
Query Conservation																				.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	D	N	T	N	H	E	D	D	R	G	T	L	V	A	F	V	S	D	E	K	A	D	A	M	F	E	L	S	A	E	E	R	K	A	T	I	L	A	S	L	A	R	Y	L	G	P	K	A	E	E	P	V	V	Y	Y	E	S	D	W	G	S	E	E	W	T	R	G	A	Y	A	A	S	F	D	L	G	G	L	H
Template Known Secondary structure							T	T		S	S																	T	S																			G	G	G	G			S							G	G	G		T	T	T		S	S	S						T	T
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		364	.	.	.	.	.				370	.	.	.	.	.	.	.	.	.	380	.	.	.					.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure								.	.	.															.	.	.	.
Query SS confidence								.	.	.															.	.	.	.
Query Sequence		V	V	G	R	T	R	.	.	.	F	K	N	L	W	L	N	T	G	H	G	T	L	G	.	.	.	.	W	T	M	A	C	G	S	G	Q	L	L	S	D	L	L	S	G	R
Query Conservation								.	.	.															.	.	.	.
Alig confidence								.	.	.															.	.	.	.
Template Conservation
Template Sequence		R	Y	G	A	D	S	R	T	P	V	G	P	I	H	F	S	C	S	D	I	A	A	E	G	Y	Q	H	V	D	G	A	V	R	M	G	Q	R	T	A	A	D	I	I	A	R
Template Known Secondary structure				G	G	G	S	S			B	T	T						G	G	G		S	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		406	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450