Job Description P0A6J5 Confidence 100.00% Date Thu Jan 5 11:03:18 GMT 2012 Rank 14 Aligned Residues 341 % Identity 14% Template c2r4jA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:aerobic glycerol-3-phosphate dehydrogenase; PDBTitle: crystal structure of escherichia coli semet substituted2 glycerol-3-phosphate dehydrogenase in complex with dhap Resolution 1.96 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	I	L	G	S	G	V	V	G	V	A	S	A	W	Y	L	N	Q	A	G	H	E	V	T	V	I	D	R	E	P	G	A	A	L	E	T	S	A	A	N	A	G	Q	I	S	P	G	Y	A	A	P	W	A	A	P	G	V	P	L	K	A	I	K	W	M	F	Q	R	H	A	P	L	A	V	R	L	D	G	T
Query Conservation
Alig confidence																																.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	I	V	I	G	G	G	I	N	G	A	G	I	A	A	D	A	A	G	R	G	L	S	V	L	X	L	E	A	Q	.	D	L	A	C	A	T	S	S	A	S	S	K	L	I	H	G	G	L	R	Y	L	E	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S												T	T	T								S	S	.	S	T	T		S	G	G	G	S	S								G	G	G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	Q	L	K	W	M	W	Q	M	L	R	N	C	D	T	S	H	Y	M	E	N	K	G	R	M	V	R	L	A	E	Y	S	R	D	C	L	K	A	L	R	A	E	T	N	I	Q	Y	E	G	R	Q	G	G	T	L	Q	L	F	R	T	E	Q	Q	Y	E	N	A	T	R	D	I	A	V	L	E	D	A	G	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	F	R	L	V	S	E	A	L	A	E	R	E	V	L	L	K	X	A	P	.	H	I	A	F	P	X	R	F	R	L	P	H	R	P	H	L	R	P	A	W	M	I	R	I	G	L	F	M	Y	D	H	L	G	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T																				T	.	T	T												T	T	T	S															S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template SS confidence
																										59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.						.	.
Predicted Secondary structure																																																																											.	.	.	.	.
Query SS confidence																																																																											.	.	.	.	.
Query Sequence		P	Y	Q	L	L	E	S	S	R	L	A	E	V	E	P	A	L	A	E	V	A	H	K	L	T	G	G	L	Q	L	P	N	D	E	T	G	D	C	Q	L	F	T	Q	N	L	A	R	M	A	E	Q	A	G	V	K	F	R	F	N	T	P	V	D	Q	L	L	C	D	G	E	Q	I	Y	.	.	.	.	.	G	V
Query Conservation																																																																											.	.	.	.	.
Alig confidence																									.	.	.																																																.	.	.	.	.
Template Conservation																									.	.	.
Template Sequence		R	T	S	L	P	G	S	T	G	L	R	F	G	A	N	S	V	L	K	P	E	I	K	.	.	.	R	G	F	E	Y	S	D	C	W	V	D	D	A	R	L	V	L	A	N	A	Q	X	V	V	R	K	G	G	E	V	L	T	R	T	R	A	T	S	A	R	R	E	N	G	L	W	I	V	E	A	E	D	I	D
Template Known Secondary structure			S	S	S										T	T	S	S	B		T	T			.	.	.																										T	T						S										T	T									T	T
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.					.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.
Predicted Secondary structure																												.	.	.	.																																										.
Query SS confidence																												.	.	.	.																																										.
Query Sequence		K	C	G	D	E	V	I	K	A	D	A	Y	V	M	A	F	G	S	Y	S	T	A	M	L	K	G	.	.	.	.	I	V	D	I	P	V	Y	P	L	K	G	Y	S	L	T	I	P	I	A	Q	E	D	G	A	P	V	S	T	I	L	D	E	T	Y	K	I	A	I	T	R	F	.	D	N	R	I	R	V	G	G
Query Conservation																												.	.	.	.																																										.
Alig confidence																												.	.	.	.																																										.
Template Conservation
Template Sequence		T	G	K	K	Y	S	W	Q	A	R	G	L	V	N	A	T	G	P	W	V	K	Q	F	F	D	D	G	X	H	L	P	S	P	Y	G	I	R	L	I	K	G	S	H	I	V	V	P	R	V	H	T	Q	K	Q	A	Y	I	L	Q	N	E	D	K	R	I	V	F	V	I	P	W	X	D	E	F	S	I	I	G	T
Template Known Secondary structure		T																G	G	G								T	T					S	S															S		S		S								T	T	S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		313				.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.													.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure			.	.	.																													.																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.																													.																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	.	.	.	A	E	I	V	G	F	N	T	E	L	L	Q	P	R	R	E	T	L	E	M	V	V	R	D	L	Y	P	R	.	G	G	H	V	E	Q	A	T	F	W	T	G	L	R	P	M	T	P	D	G	.	.	.	.	.	.	.	.	.	.	.	.	T	P	V	V	G	R	T	R	F	K	N	L	W	L	N
Query Conservation			.	.	.																													.																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.																													.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	D	V	E	Y	K	G	D	P	K	A	V	K	I	E	E	S	E	I	N	Y	L	L	N	V	Y	N	T	H	F	K	K	Q	L	S	R	D	D	I	V	W	T	Y	S	G	V	R	P	L	C	D	D	E	S	D	S	P	Q	A	I	T	R	D	Y	T	L	D	I	H	D	E	N	G	K	A	P	L	L	S	V
Template Known Secondary structure								S		G	G	G																	T	T	B	S	S				G	G	G																	S	S	G	G	G	S											S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	H	G	T	L	G	W	T	M	A	C	G	S	G	Q	L	L	S	D	L	L	S	G	R
Query Conservation
Alig confidence					.	.	.
Template Conservation					.	.	.
Template Sequence		F	G	G	.	.	.	K	L	T	T	Y	R	K	L	A	E	H	A	L	E	K	L	T	P	Y
Template Known Secondary structure					.	.	.		S	T	T													G	G	G
Template Predicted Secondary structure					.	.	.
Template SS confidence
		351	.	.				.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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